Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I17
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26175| Best HMM Match : No HMM Matches (HMM E-Value=.)              59   7e-19
SB_49569| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_15777| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 29   3.3  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)                  29   4.3  
SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_44746| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         27   9.9  

>SB_26175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 59.3 bits (137), Expect(2) = 7e-19
 Identities = 32/78 (41%), Positives = 43/78 (55%)
 Frame = +2

Query: 317 PDFSAYRRKETQDPTSKANETIDERQSFTYLIXXXXXXXXXXXXXXXXTHFVSSMSAAAD 496
           PDF  YRR  T +   K   T   R++FTYL+                 +F+S+MSA+AD
Sbjct: 2   PDFGDYRRPSTSE-VGKTETTEIGRRAFTYLVVAGMGVTGVHAGKNLLVNFLSTMSASAD 60

Query: 497 VLALAKIEIXLAEIPQGK 550
           VLA+AKIE+ L  IP+ K
Sbjct: 61  VLAMAKIEVDLNTIPEEK 78



 Score = 52.4 bits (120), Expect(2) = 7e-19
 Identities = 23/37 (62%), Positives = 28/37 (75%)
 Frame = +2

Query: 536 IPQGKSVTFKWRGKPLFIRHRTAXEISTXKAVPVDTL 646
           I  GK++ FKWRGKPLF+RHRTA EIS  + V V +L
Sbjct: 110 ITSGKNMVFKWRGKPLFVRHRTADEISEEQNVDVASL 146


>SB_49569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 194 GRTTVFSEGVGTTTRGFRLLATTWVEDLK 108
           GR  V++  V T TR  +  AT WVED+K
Sbjct: 52  GRPDVYATQVHTVTRSKKDAATIWVEDIK 80


>SB_15777| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 194 GRTTVFSEGVGTTTRGFRLLATTWVEDLK 108
           GR  V++  V T TR  +  AT WVED+K
Sbjct: 52  GRPDVYATQVHTVTRSKKDAATIWVEDIK 80


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 127 VVANSLKPLVVVPTPSEKTVVLPLPKTSTVETLH-GSLPIQGFEGQSRNXSTCPSTFRS 300
           V  N+  P  V   P E  ++LPL +   + TLH G +P   + G  ++ ++ P   R+
Sbjct: 783 VPCNTTVPSAVACVPEEGGLLLPLAQGYFISTLHTGKVPAAFWAGFPQSETSYPVMLRA 841


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/75 (26%), Positives = 30/75 (40%)
 Frame = +1

Query: 76   SVVRAGHLAPYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGSLPIQGFE 255
            SV  + HL P   SSTQ  ++ +    V  + +  T V P   +ST      +   QG  
Sbjct: 1835 SVASSTHLTPSVASSTQAASSVILSAEVTTSVTSSTQVTPSVASSTQAATSVTPSTQGMP 1894

Query: 256  GQSRNXSTCPSTFRS 300
              + +    PS   S
Sbjct: 1895 SVAPSTQMTPSVASS 1909


>SB_3069| Best HMM Match : zf-C2H2 (HMM E-Value=1e-06)
          Length = 625

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 539 EFQPX*FQSWLKPKHQQPLTLMTQSG 462
           +F P  F ++L P+ Q P  LM+ SG
Sbjct: 422 DFDPSEFDAYLNPEQQDPALLMSPSG 447


>SB_39550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +1

Query: 100 APYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTVET 222
           AP   + T    +   P    PTP+  T   P PKT T  T
Sbjct: 48  APTQTTPTPTTPSPTAPTQTTPTPATPTPTTPTPKTPTPTT 88


>SB_44746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 103 PYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLP 201
           P  + + +   +  + + ++P PSEK V+LPLP
Sbjct: 66  PPLRGACRYYHSPQRSVSILPLPSEKHVILPLP 98


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 100  APYFKSS--TQVVANSLKPLVVVPTPSEKTVVLPLPKT-STVETLHGSLPIQGFEGQSRN 270
            A +F +S  T V   S     + PTPS    VLPL  T S   +  GS+   G+  ++R+
Sbjct: 2473 ASFFVTSKLTAVSITSQSEYTITPTPSMSLSVLPLTSTVSASPSRPGSVKEPGWPARARD 2532


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,290,863
Number of Sequences: 59808
Number of extensions: 374447
Number of successful extensions: 905
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)