Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I17
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038618-8|AAB92071.1|  276|Caenorhabditis elegans Iron-sulfur p...   102   3e-22
Z46381-5|CAD92392.1|  328|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U41025-1|AAM51508.1|  407|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF016423-1|AAB65324.2|  410|Caenorhabditis elegans Hypothetical ...    27   8.7  

>AF038618-8|AAB92071.1|  276|Caenorhabditis elegans Iron-sulfur
           protein protein 1 protein.
          Length = 276

 Score =  102 bits (244), Expect = 3e-22
 Identities = 53/120 (44%), Positives = 72/120 (60%), Gaps = 1/120 (0%)
 Frame = +2

Query: 290 RFAHTDISYPDFSAYRRKETQDPTSKANETIDERQSF-TYLIXXXXXXXXXXXXXXXXTH 466
           R AHTD+++PD S YRR  T++    A +T D+R++  T L                   
Sbjct: 77  RLAHTDVTFPDMSNYRRDSTKNTQVPARDTEDQRRALPTALYYGAGGVLSLWAGKEVVQT 136

Query: 467 FVSSMSAAADVLALAKIEIXLAEIPQGKSVTFKWRGKPLFIRHRTAXEISTXKAVPVDTL 646
            VS  + AAD  ALA IEI +A+IP+GK+ TF+WRGKP+F++HRT  EI+  KAVPV  L
Sbjct: 137 LVSYKAMAADQRALASIEINMADIPEGKTKTFEWRGKPVFVKHRTKAEIAKEKAVPVADL 196


>Z46381-5|CAD92392.1|  328|Caenorhabditis elegans Hypothetical
           protein M01F1.8a protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
 Frame = +1

Query: 157 VVPTPSEKTVVLPLPKTSTVETLHGSL------PIQGFEGQSRNXSTCPSTFRSY 303
           + PTP+  TV  PL K  T + +  +       PI GF+    +   C + FR++
Sbjct: 230 IAPTPTPVTVQRPLRKPVTPQPVKSAFQAQKPPPIDGFDYFDSSKEACAARFRNF 284


>U41025-1|AAM51508.1|  407|Caenorhabditis elegans Hypothetical
           protein C01C4.3b protein.
          Length = 407

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = +2

Query: 167 HPPRKRSSCPCQKLQLWKLCMDPCRFRALKVKAGTXVPAQVRFAHTDISYPDFSAYRRKE 346
           HPPR  +  P ++ +  +  MD  R    +    T V A     H DI+ P  S+   +E
Sbjct: 38  HPPRNATQSPQRQPRTSESSMDFPRSALRRNSTDTHVFANRTHNHRDINVPACSS---EE 94

Query: 347 TQDPTSKANETIDERQSFT 403
            +  T++ N    +R S T
Sbjct: 95  DRVSTARRNSLFVKRGSVT 113


>AF016423-1|AAB65324.2|  410|Caenorhabditis elegans Hypothetical
           protein F40A3.5 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 232 IHAKFPQLKFLARAGRPFSRRVLVRPPEVSGC*LRLG 122
           IH++  +       GR F+R VLV  P++  C ++LG
Sbjct: 224 IHSQLDEFGQELTHGRIFTRNVLVTEPDLRKCEVKLG 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,258,844
Number of Sequences: 27780
Number of extensions: 279516
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)