Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_I17
(648 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g13440.1 68418.m01547 ubiquinol-cytochrome C reductase iron-s... 67 8e-12
At5g13430.1 68418.m01546 ubiquinol-cytochrome C reductase iron-s... 67 8e-12
At5g01110.1 68418.m00015 pentatricopeptide (PPR) repeat-containi... 31 0.87
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ... 30 1.5
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 30 1.5
At4g39830.1 68417.m05643 L-ascorbate oxidase, putative similar t... 28 4.7
At2g27660.1 68415.m03352 DC1 domain-containing protein contains ... 28 6.1
>At5g13440.1 68418.m01547 ubiquinol-cytochrome C reductase
iron-sulfur subunit, mitochondrial, putative / Rieske
iron-sulfur protein, putative similar to
ubiquinol--cytochrome-c reductase from Solanum tuberosum
[SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133]
Length = 274
Score = 67.3 bits (157), Expect = 8e-12
Identities = 46/130 (35%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Frame = +2
Query: 266 GTXVPAQVRFAHTD---ISYPDFSAYRRKETQDPTSKANETIDERQSFTYLIXXXXXXXX 436
G+ VPA V T I Y D + + R DP+ +A F Y +
Sbjct: 76 GSEVPATVEAVKTPNSKIVYDDHN-HERYPPGDPSKRA---------FAYFVLSGGRFVY 125
Query: 437 XXXXXXXXTHFVSSMSAAADVLALAKIEIXLAEIPQGKSVTFKWRGKPLFIRHRTAXEIS 616
+ SMSA+ DVLALA +E+ L I G +VT KWRGKP+FIR RT +I
Sbjct: 126 ASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRRRTEDDIK 185
Query: 617 TXKAVPVDTL 646
+V V +L
Sbjct: 186 LANSVDVGSL 195
>At5g13430.1 68418.m01546 ubiquinol-cytochrome C reductase
iron-sulfur subunit, mitochondrial, putative / Rieske
iron-sulfur protein, putative similar to
ubiquinol--cytochrome-c reductase from Solanum tuberosum
[SP|P37841], Nicotiana tabacum [SP|P51132] [SP|P51133];
non-consensus AT acceptor splice site at exon 2
Length = 272
Score = 67.3 bits (157), Expect = 8e-12
Identities = 46/130 (35%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Frame = +2
Query: 266 GTXVPAQVRFAHTD---ISYPDFSAYRRKETQDPTSKANETIDERQSFTYLIXXXXXXXX 436
G+ VPA V T I Y D + + R DP+ +A F Y +
Sbjct: 74 GSEVPATVEAVKTPNSKIVYDDHN-HERYPPGDPSKRA---------FAYFVLSGGRFVY 123
Query: 437 XXXXXXXXTHFVSSMSAAADVLALAKIEIXLAEIPQGKSVTFKWRGKPLFIRHRTAXEIS 616
+ SMSA+ DVLALA +E+ L I G +VT KWRGKP+FIR RT +I
Sbjct: 124 ASVLRLLVLKLIVSMSASKDVLALASLEVDLGSIEPGTTVTVKWRGKPVFIRRRTEDDIK 183
Query: 617 TXKAVPVDTL 646
+V V +L
Sbjct: 184 LANSVDVGSL 193
>At5g01110.1 68418.m00015 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 729
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +1
Query: 49 PIIYRNKMNSVVRAGHLAPYFKSSTQVVANSLKPLVVV 162
PI Y +N++ GHLA F+ ++++ ++KP V++
Sbjct: 550 PISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMI 587
>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
(Swiss-Prot:Q9H583) [Homo sapiens]
Length = 1830
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 97 LAPYFKSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTVETL-HGSLPIQGFEGQSRNX 273
L F+SS + N K V+ S TVVL L + + +TL GSL + + Q +N
Sbjct: 966 LVSMFRSSNGSIQNGAKEAVLRLKLSSSTVVLALDRITQQDTLVIGSLSKK--KKQKKNS 1023
Query: 274 STCP 285
+CP
Sbjct: 1024 KSCP 1027
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = +1
Query: 112 KSSTQVVANSLKPLVVVPTPSEKTVVLPLPKTSTVETLHGSLPIQGFEGQSRNXSTCPST 291
+S +Q L+P V PTP+ K V P P + V + S ++ E N S+ PS+
Sbjct: 746 QSPSQAPTPILEP-VHAPTPNSKPVQSPTPSSEPVSSPEQSEEVEAPEPTPVNPSSVPSS 804
Query: 292 FRSY*HFIP 318
S IP
Sbjct: 805 SPSTDTSIP 813
>At4g39830.1 68417.m05643 L-ascorbate oxidase, putative similar to
SP|P14133 L-ascorbate oxidase precursor (EC 1.10.3.3)
(Ascorbase) {Cucumis sativus}; contains Pfam profile
PF00394: Multicopper oxidase
Length = 582
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/57 (21%), Positives = 27/57 (47%)
Frame = -2
Query: 191 RTTVFSEGVGTTTRGFRLLATTWVEDLK*GAKCPALTTEFILFR*IIGK*LFFHYFS 21
+ + +E V G R + T W + ++ +CP L E +++ ++ + + Y S
Sbjct: 81 KNSFMTENVAVHWHGIRQIGTPWFDGVEGVTQCPILPGEVFIYQFVVDRPGTYMYHS 137
>At2g27660.1 68415.m03352 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 718
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 138 QPETSGGRTNTLRENGRPALA 200
QP T GGR R NGRP +A
Sbjct: 639 QPRTMGGRPLQYRPNGRPNMA 659
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,501,878
Number of Sequences: 28952
Number of extensions: 261998
Number of successful extensions: 696
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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