Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I11
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0185 + 12774608-12775970,12776058-12776983                       30   1.8  
11_06_0655 - 25923171-25923185,25923208-25923432,25923865-259243...    27   9.7  

>06_02_0185 + 12774608-12775970,12776058-12776983
          Length = 762

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +1

Query: 79  TTLLSLRIAFLLPVFRTTNXEYGNGASCLSAHGFDMPHAIVGIYSGAKNIFIXRNXTSDG 258
           T + S  + F + +FRT   + G G + + A G D P    G YSG   +    N ++DG
Sbjct: 114 TYVASFNMVFRVNIFRTNTSDPGEGVAFVVASGLDPPPP--GSYSGFLGL---TNASTDG 168


>11_06_0655 -
           25923171-25923185,25923208-25923432,25923865-25924324,
           25924330-25924985
          Length = 451

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -2

Query: 494 PQGMNICISXLYFSLAARIFRXQKT*TAYNCSNYTIRFH*ES*RLYPWRRRI 339
           P+  + C+S  YF +    F   K    Y C + ++ +      + PWR  I
Sbjct: 292 PRNWSWCLSRAYFGVVGLSFVSSKLEVLYGCFDRSLEYTASPPPVPPWRAAI 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,198,359
Number of Sequences: 37544
Number of extensions: 294259
Number of successful extensions: 527
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)