Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I11
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)                      38   0.005
SB_30091| Best HMM Match : MobB (HMM E-Value=0.1)                      30   1.4  
SB_18586| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_11725| Best HMM Match : DUF1472 (HMM E-Value=6.8)                   29   4.3  
SB_17042| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_33582| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
          Length = 1066

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 1/105 (0%)
 Frame = +2

Query: 227 FSLXEIXPLMAEFYPERMSVQWISXTTYIYKDPGG-IXKYDASTDKVVTILNEIELYNLS 403
           F+L ++     ++ P+  SV+W+S  TY    PGG I   +A +     +++   L  L 
Sbjct: 149 FTLDDV--FSGKYQPKFPSVKWLSDDTYRSFGPGGSIITTEAFSGAQTEVVSAKSLEALG 206

Query: 404 NYTLSTFSEXGKYVLLTKNTXKIYRYSFLAEYSVLHIEKRLIYKL 538
                T S     +   KN    YRYS  A+Y V  I K    K+
Sbjct: 207 GEGY-TLSPDKTMLFFAKNKTMEYRYSSFADYFVYDIAKNKYEKI 250


>SB_30091| Best HMM Match : MobB (HMM E-Value=0.1)
          Length = 626

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 366 TTLSVEASYXFIPPGSLYIYV-VXDIHCTDILS 271
           TTL V ASY  I  G    YV    +HCTD L+
Sbjct: 55  TTLCVNASYELIEKGHFVAYVNSRHVHCTDNLA 87


>SB_18586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 751

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -1

Query: 366 TTLSVEASYXFIPPGSLYIYV-VXDIHCTDILS 271
           TTL V ASY  I  G    YV    +HCTD L+
Sbjct: 52  TTLCVNASYELIEKGHFVAYVNSRHVHCTDNLA 84


>SB_11725| Best HMM Match : DUF1472 (HMM E-Value=6.8)
          Length = 160

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = +2

Query: 149 MEQAVFLLMGLICHTQSSAYIQGQKIF 229
           + + + L++ LI H+  +AYI+G+K+F
Sbjct: 99  LAKCIELILPLIIHSNQTAYIKGRKLF 125


>SB_17042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 10/64 (15%)
 Frame = -2

Query: 170 AERQLAPL--PYS*FVVRNTGSKKAILNESKVVQST--------SHDRVRRTVVS*RAHG 21
           A R+L PL   ++ F ++N  +++ +LN  K +  T         H ++R+T+ + R H 
Sbjct: 2   AHRKLRPLYRKFAFFKIQNKKARRTMLNTPKPIPITPEDTTNNDEHPKIRKTMSNTRRHD 61

Query: 20  KQGR 9
           KQ R
Sbjct: 62  KQCR 65


>SB_41315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1761

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +2

Query: 434  GKYVLLTKNTXKIYRYSFLAEYSVLHIEKRLIYKLSDYPLQVVV 565
            GK+V+   +T ++Y  +     ++ H  + L +KL+ YP+   V
Sbjct: 1212 GKFVITPGSTLRLYHVTPTDTVALTHANELLHHKLAKYPVTTAV 1255


>SB_33582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 271 RIKLGHQRXYFX**KYFLPLNICRRLRVAYQ-THEQKDSLLHCHIXS 134
           R K    R YF   +YF  + I  R  +AY  T   K++ ++CH+ S
Sbjct: 145 REKANIMRLYFIIRRYFTVIPISHRKNMAYTFTVGSKETDVYCHMSS 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,288,281
Number of Sequences: 59808
Number of extensions: 370763
Number of successful extensions: 708
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)