Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I11
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   5.9  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   7.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.8  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 25 CARYETTVRRTRSCDVD 75
          C  +ETT      CDVD
Sbjct: 47 CGIHETTYNSIMKCDVD 63


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 175 HEQKDSLLHCHIXSS*YETQEA 110
           HEQ D+L  C   +  Y T+ +
Sbjct: 29  HEQSDTLYVCEFCNRRYRTKNS 50


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +1

Query: 34  YETTVRRTRSCDVDWTTLLSLRIAFLLPVF 123
           YE  +R    C  DW  ++        PVF
Sbjct: 373 YENEMRLRNGCPADWLWIVPPISGSATPVF 402


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,848
Number of Sequences: 438
Number of extensions: 3645
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)