Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I11
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01990.1 68414.m00117 expressed protein                             29   2.0  
At2g29380.1 68415.m03569 protein phosphatase 2C, putative / PP2C...    29   3.5  
At4g33680.1 68417.m04784 aminotransferase class I and II family ...    27   8.1  

>At1g01990.1 68414.m00117 expressed protein
          Length = 245

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
 Frame = +2

Query: 275 RMSVQWISXTT-----YIYKDPGGIXKYDASTDKVVTILNEIELY 394
           R+S +W+          + +DPG + +Y    D+++ IL ++E+Y
Sbjct: 150 RLSAEWLETARRELEEVVERDPGRVMEYSQVVDELMEILRDMEVY 194


>At2g29380.1 68415.m03569 protein phosphatase 2C, putative / PP2C,
           putative contains  PF00481: Protein phosphatase 2C
           domain; similar to protein phpsphatase 2C (PP2C)
           (GI:7768151) [Fagus sylvatica].
          Length = 362

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 210 IYADDCVWHIKPMSRKTACSIAIFXVRSTKHRKQEGDP 97
           I A D +W +  +S +TACS+A   +R    R+   DP
Sbjct: 291 ILASDGLWDV--VSNETACSVARMCLRGGGRRQDNEDP 326


>At4g33680.1 68417.m04784 aminotransferase class I and II family
           protein low similarity to Aromatic Aminotransferase from
           Pyrococcus horikoshii GP|14278621; contains Pfam profile
           PF00155 aminotransferase, classes I and II
          Length = 461

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 130 TNXEYGNGASCLSAHGFDMPHAIVGIYSGAKNIFI 234
           +N       +CL+  G +  H ++G Y    NI I
Sbjct: 347 SNISQAGALACLTPEGLEAMHKVIGFYKENTNIII 381


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,115,001
Number of Sequences: 28952
Number of extensions: 242885
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)