Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I10
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...    65   7e-12
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    28   1.0  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    27   3.1  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   7.2  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   7.2  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   9.5  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   9.5  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    25   9.5  

>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 65.3 bits (152), Expect = 7e-12
 Identities = 28/67 (41%), Positives = 43/67 (64%)
 Frame = +2

Query: 374 DIXQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIXINLPEVTLNKMNNWC 553
           ++ Q +VW+D EMTGL++    +ME+A ++TD  L  V    D  I L E  L++MN+WC
Sbjct: 3   NLKQPLVWIDCEMTGLEVGKHVLMEVAAIITDGNLRPVEEKFDAVIKLDEKQLSEMNDWC 62

Query: 554 KVQHGEN 574
             QHG++
Sbjct: 63  IEQHGKS 69


>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 166 MYVM*CCTTI-NFIFFCVMTCSYVQHVKSIS 255
           MYV+    TI  ++FFC  +CS+ Q + +I+
Sbjct: 209 MYVVGLVLTILTYVFFCASSCSFNQAINTIN 239


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 428 ENDHIMEIACL-VTDAQLNVVATGPDIXINLPE-VTLNKMNNW 550
           ENDH+ EI CL +++    +V  G D  I + + VTL   + W
Sbjct: 204 ENDHVKEITCLAISNDGRWIVTGGLDHRIVIRDSVTLEPQHCW 246


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 616 RLVKYIXTQCXAXCILAVLDLTPVIHFV*SHFR*IYXYIGTCRH 485
           +L+  +  +C    I AV  L  + HF+  +F+  Y Y+G   H
Sbjct: 418 QLISSLLNRCTLSSIQAVF-LLSLYHFLTGNFKCAYSYLGFAIH 460


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 272 YNMIKSTLSRSAITFLTRNLSMSPKIMMK 358
           YN++ +TL R  I  L  N+S+ P I +K
Sbjct: 378 YNILVATLLREGIENLKDNMSIRPGIPVK 406


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 252 NRLYMLNVTACHYTKKNEINSCTTLHYIHTIS 157
           N LY+LN ++  + K N   +  +  Y HTIS
Sbjct: 163 NSLYLLNTSSLVWQKANASGARPSGRYGHTIS 194


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -3

Query: 531 KVTSGRFIXISGPVATTFSCASVTRHAISIMWSF 430
           K   G F+ +SG     F    +    +S +WSF
Sbjct: 705 KTQYGCFLWVSGACVRQFGVPEMDEQTLSAVWSF 738


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 394 YNPLXYVNFSIFFHHYFRRHGQITS 320
           Y+    +NF +F+HH     GQ+T+
Sbjct: 259 YSTSYSLNFHLFYHHLTTMMGQMTT 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,832
Number of Sequences: 5004
Number of extensions: 46671
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)