Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I10
         (650 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC107887-1|AAI07888.1|  237|Homo sapiens REXO2 protein protein.        92   2e-18
BC105026-1|AAI05027.1|  237|Homo sapiens REX2, RNA exonuclease 2...    92   2e-18
BC105024-1|AAI05025.1|  237|Homo sapiens small fragment nuclease...    92   2e-18
AK223200-1|BAD96920.1|  237|Homo sapiens small fragment nuclease...    92   2e-18
AF151872-1|AAD34109.1|  205|Homo sapiens CGI-114 protein protein.      92   2e-18
CR533500-1|CAG38531.1|  237|Homo sapiens DKFZP566E144 protein.         91   2e-18
BC003502-1|AAH03502.1|   79|Homo sapiens REXO2 protein protein.        64   3e-10

>BC107887-1|AAI07888.1|  237|Homo sapiens REXO2 protein protein.
          Length = 237

 Score = 91.9 bits (218), Expect = 2e-18
 Identities = 36/66 (54%), Positives = 53/66 (80%)
 Frame = +2

Query: 377 IXQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIXINLPEVTLNKMNNWCK 556
           + QR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP++ I  P+  L+ M++WCK
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 557 VQHGEN 574
             HG++
Sbjct: 99  EHHGKS 104


>BC105026-1|AAI05027.1|  237|Homo sapiens REX2, RNA exonuclease 2
           homolog (S. cerevisiae) protein.
          Length = 237

 Score = 91.9 bits (218), Expect = 2e-18
 Identities = 36/66 (54%), Positives = 53/66 (80%)
 Frame = +2

Query: 377 IXQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIXINLPEVTLNKMNNWCK 556
           + QR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP++ I  P+  L+ M++WCK
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 557 VQHGEN 574
             HG++
Sbjct: 99  EHHGKS 104


>BC105024-1|AAI05025.1|  237|Homo sapiens small fragment nuclease
           protein.
          Length = 237

 Score = 91.9 bits (218), Expect = 2e-18
 Identities = 36/66 (54%), Positives = 53/66 (80%)
 Frame = +2

Query: 377 IXQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIXINLPEVTLNKMNNWCK 556
           + QR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP++ I  P+  L+ M++WCK
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 557 VQHGEN 574
             HG++
Sbjct: 99  EHHGKS 104


>AK223200-1|BAD96920.1|  237|Homo sapiens small fragment nuclease
           variant protein.
          Length = 237

 Score = 91.9 bits (218), Expect = 2e-18
 Identities = 36/66 (54%), Positives = 53/66 (80%)
 Frame = +2

Query: 377 IXQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIXINLPEVTLNKMNNWCK 556
           + QR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP++ I  P+  L+ M++WCK
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 557 VQHGEN 574
             HG++
Sbjct: 99  EHHGKS 104


>AF151872-1|AAD34109.1|  205|Homo sapiens CGI-114 protein protein.
          Length = 205

 Score = 91.9 bits (218), Expect = 2e-18
 Identities = 36/66 (54%), Positives = 53/66 (80%)
 Frame = +2

Query: 377 IXQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIXINLPEVTLNKMNNWCK 556
           + QR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP++ I  P+  L+ M++WCK
Sbjct: 7   MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 66

Query: 557 VQHGEN 574
             HG++
Sbjct: 67  EHHGKS 72


>CR533500-1|CAG38531.1|  237|Homo sapiens DKFZP566E144 protein.
          Length = 237

 Score = 91.5 bits (217), Expect = 2e-18
 Identities = 36/66 (54%), Positives = 52/66 (78%)
 Frame = +2

Query: 377 IXQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATGPDIXINLPEVTLNKMNNWCK 556
           + QR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A GP++ I  P+  L+ M++WCK
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDSMSDWCK 98

Query: 557 VQHGEN 574
             HG +
Sbjct: 99  EHHGRS 104


>BC003502-1|AAH03502.1|   79|Homo sapiens REXO2 protein protein.
          Length = 79

 Score = 64.5 bits (150), Expect = 3e-10
 Identities = 26/40 (65%), Positives = 35/40 (87%)
 Frame = +2

Query: 377 IXQRIVWMDLEMTGLDIENDHIMEIACLVTDAQLNVVATG 496
           + QR+VW+DLEMTGLDIE D I+E+ACL+TD+ LN++A G
Sbjct: 39  MAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEG 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,950,663
Number of Sequences: 237096
Number of extensions: 1568797
Number of successful extensions: 6150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6150
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)