Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I09
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    28   1.4  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.4  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       26   5.5  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   9.5  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    25   9.5  

>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +2

Query: 248 FVAPYHSDEYHEVLRHESDLPPSISRQPLTSSQEYLELXKRESD 379
           F+ PY  D Y  V+  + ++  +++   + S++ ++E  K  SD
Sbjct: 259 FIVPYTEDTYILVVIADPEIESAVTLMNIQSARRFIEASKSASD 302


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 119 SETSLRYYKKIR-NRWIVSIWSTTPHKQPPLDLTELNIEKLPIQFV 253
           SE +L+Y  + R N WI   W     + P L    L +++ P++ +
Sbjct: 294 SEEALQYITRSRVNLWIAHYWKDFHPRWPFLHRGTLKVDEAPVELL 339


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +3

Query: 405 ISCCSSAFNVCFDGYYINFKIWSSVVQIKA 494
           + CC+S  ++ F  YY+++K +  +  I++
Sbjct: 51  VECCASLCSLIFSKYYLHYKTFRILTIIQS 80


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +2

Query: 260 YHSDEYHEVLRHESDLPPSISRQPLTSSQEYLELXKRES 376
           Y +   +E L   S++  S   +P+T SQ Y  + +  S
Sbjct: 135 YENSSKNEYLDFNSEISASPVNEPMTHSQSYTSIDRLNS 173


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 243 IGNFSMFNSVKSRGGCL*GVVDQMETIQRFLIFL**RSEVSLVTHCFT 100
           +G+FS  NSV      +       + I RF + +  + ++    HCFT
Sbjct: 566 MGDFSEINSVSKYAARMGQCFSTTKEINRFCVDISLQDDIVRNNHCFT 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,406,088
Number of Sequences: 5004
Number of extensions: 42937
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)