Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I09
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32884| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)               29   2.5  
SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.4  
SB_49263| Best HMM Match : Surp (HMM E-Value=1e-28)                    29   4.4  
SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)               28   5.8  

>SB_32884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 287 LRHESDLPPSISRQPLTSSQEYLELXKRESDIXKWHSC 400
           L+HE+ LP     + + S +E +++ K++ DI + H C
Sbjct: 77  LQHENTLPQEYFHRLVESFEERMQVYKKQIDIMESHLC 114


>SB_14837| Best HMM Match : UCH (HMM E-Value=1.10002e-42)
          Length = 1712

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 164 IVSIWSTTPHKQPPLDLTELNIEKL 238
           ++SIWS  PH++  +D T+ N EK+
Sbjct: 236 LISIWSARPHQKTSVDGTDDNEEKI 260


>SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 656

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 194 KQPPLDLTELNIEKLPIQFVAPYHSDEYHEVLRHESDLPPSI 319
           K P  D  +LN+     + V  Y S++  E + H+S+LP +I
Sbjct: 600 KLPKSDCNQLNLLNTTARPVVTYSSNDALEWMTHQSELPGNI 641


>SB_4029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 417

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 420 SAFNVCFDGYYINFKIWSSVVQIKAHHI 503
           +   + F+ Y+INFK++ +VV+ K  H+
Sbjct: 90  TGMTLTFNYYFINFKVFVNVVKYKLDHV 117


>SB_49263| Best HMM Match : Surp (HMM E-Value=1e-28)
          Length = 641

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 252 WHHTTVTNIMKF*DTSLIYPHQYPVSLSLHH 344
           WHH  +        TS   PH YP   + HH
Sbjct: 305 WHHDQMAYPYDMTTTSYAVPHTYPALTAYHH 335


>SB_8394| Best HMM Match : zf-C3HC4 (HMM E-Value=8.6e-08)
          Length = 1631

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 113 VTSETSLRYYKKIRNRWIVSIWSTTPHKQPPLDLTELNIEKLPIQFVAPYHSDEY 277
           +T E S+R+Y+       + ++   P  +P L        KL   F A YH++EY
Sbjct: 408 LTCEPSIRHYRPC-----IFVYMDIPFGKPDLKFGITGDNKLEFPFKAVYHNNEY 457


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,647,734
Number of Sequences: 59808
Number of extensions: 316248
Number of successful extensions: 722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)