Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_I01
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c... 84 2e-17
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c... 83 3e-17
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy... 61 1e-10
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc... 44 2e-05
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 34 0.021
SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual 27 3.1
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 7.2
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 7.2
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 7.2
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 9.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 9.5
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 25 9.5
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit... 25 9.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 9.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 9.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.5
>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 83.8 bits (198), Expect = 2e-17
Identities = 39/92 (42%), Positives = 56/92 (60%)
Frame = +1
Query: 154 FIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGF 333
F+++AIS + V VFSKS+CP+CK AK+ K P K EL++ ++G+ IQ L + T
Sbjct: 8 FVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQ 67
Query: 334 RTVPQVFINGNCVGGGSDVKALYESGKLEPML 429
TVP +F +GG SD+ L SG L M+
Sbjct: 68 STVPSIFFRNQFIGGNSDLNKLRSSGTLTKMI 99
>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 101
Score = 83.4 bits (197), Expect = 3e-17
Identities = 37/94 (39%), Positives = 61/94 (64%)
Frame = +1
Query: 145 IQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQL 324
++ F+ A++ + VVVF+KSYCPYC + V K +V +++ ++G+ IQ L +
Sbjct: 4 VESFVDSAVADNDVVVFAKSYCPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKK 63
Query: 325 TGFRTVPQVFINGNCVGGGSDVKALYESGKLEPM 426
TG RTVP +FI+ VGG SD +AL++ G+L+ +
Sbjct: 64 TGQRTVPNIFIHQKHVGGNSDFQALFKKGELDSL 97
>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 166
Score = 61.3 bits (142), Expect = 1e-10
Identities = 27/92 (29%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Frame = +1
Query: 163 EAISKDKVVVFSKSYCPYCKLAKDVFE---KVKQPIKVIELNERDDGNTIQDNLAQLTGF 333
E ++ V++FS+ CPY AK + ++ P V+E+ + + ++D L+ ++
Sbjct: 61 EVFLENPVIIFSRPGCPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDI 120
Query: 334 RTVPQVFINGNCVGGGSDVKALYESGKLEPML 429
T+P +F+ G+ +GG V+ALY+ KL+ L
Sbjct: 121 STMPNIFVGGHSIGGSDSVRALYQEEKLQSTL 152
>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 146
Score = 44.0 bits (99), Expect = 2e-05
Identities = 31/126 (24%), Positives = 66/126 (52%), Gaps = 7/126 (5%)
Frame = +1
Query: 73 SKFSTWVLSSGKITRSSKMAGSIXIQQFIKEAISKDKVVVFSKS-----YCPYCKLAKDV 237
S F W+ + I+ +M S +Q +++A+ +D +V+F K C + A +
Sbjct: 3 SMFRFWIPKTS-ISMQLRML-STQTRQALEQAVKEDPIVLFMKGTPTRPMCGFSLKAIQI 60
Query: 238 F--EKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESG 411
E V K++ N + + +++ + + + + T+PQ++ING VGG + ++++SG
Sbjct: 61 LSLENVASD-KLVTYNVLSN-DELREGIKEFSDWPTIPQLYINGEFVGGSDILASMHKSG 118
Query: 412 KLEPML 429
+L +L
Sbjct: 119 ELHKIL 124
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 33.9 bits (74), Expect = 0.021
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +1
Query: 295 NTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPML 429
++++ L + + T PQ++I G VGG V + E+G+L+ ML
Sbjct: 198 DSVRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEMIENGELQEML 242
>SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +2
Query: 200 NLTVLTVSWQKMFLRK*SNQLKL--LS*MNVMMETPFKIISHN*LVSELYLK 349
N T+ ++S K F R+ N + + LS N +ETPF + H+ +VSE +++
Sbjct: 36 NNTIDSLSIAKQF-REIKNNINISHLSRENYWVETPFGKVFHSEVVSEEFMQ 86
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 178 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 270
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 178 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 270
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 178 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 270
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DNILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 223 LAKDVFEKVKQPIK-VIELNERDDGNTIQDNLAQLTGFRTV 342
L K V + PI+ + N+ G+TI LA +TG RT+
Sbjct: 381 LLKKVAQLADVPIQSFVVRNDSPCGSTIGPKLAAMTGMRTL 421
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 178 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 270
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 178 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 270
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 178 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 270
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 178 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 270
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 122 DERVIFPELRTHVLNFEMKI 63
DE I P ++TH+LNF + I
Sbjct: 240 DEERIDPNIKTHMLNFGIDI 259
>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 161
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -2
Query: 331 NQSVVRDYLEWCFHH 287
+ +V+R LEWC HH
Sbjct: 47 SSNVLRKVLEWCEHH 61
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 178 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 270
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 178 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 270
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 178 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 270
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 178 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 270
D +++ SKS + K KDV +K+K +I
Sbjct: 566 DDILIHSKSESEHVKHVKDVLQKLKNANLII 596
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,171
Number of Sequences: 5004
Number of extensions: 53474
Number of successful extensions: 178
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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