Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_I01
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)             87   1e-17
SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)           82   4e-16
SB_45748| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)          42   3e-04
SB_45745| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)          42   3e-04
SB_1233| Best HMM Match : DUF547 (HMM E-Value=0)                       42   3e-04
SB_52133| Best HMM Match : Glutaredoxin (HMM E-Value=4.4e-17)          40   0.002
SB_20536| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.012
SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)                31   0.62 
SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)          31   1.1  
SB_38289| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_17581| Best HMM Match : HHH (HMM E-Value=4.2)                       30   1.9  
SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)                   28   5.8  

>SB_27553| Best HMM Match : Pyr_redox (HMM E-Value=1.1e-20)
          Length = 1037

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 42/114 (36%), Positives = 69/114 (60%)
 Frame = +1

Query: 91  VLSSGKITRSSKMAGSIXIQQFIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVI 270
           V+ S +   +  MA    IQ+ I+++I+ + V++FSKS+CP+CK  K +FE +      +
Sbjct: 548 VVLSDRSPEAKVMAPVPQIQRLIEDSINNNAVMIFSKSFCPFCKKVKAIFESINVQYTAM 607

Query: 271 ELNERDDGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKALYESGKLEPMLI 432
           EL+  D+G  IQ+ L + +G +TVP V+I GN VGG   +  L E  K+  ++I
Sbjct: 608 ELDLVDNGPAIQEALLEKSGQKTVPNVYIRGNHVGGSDIITKLQEENKILGLII 661


>SB_4742| Best HMM Match : Glutaredoxin (HMM E-Value=5.6e-19)
          Length = 111

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
 Frame = +1

Query: 154 FIKEAISKDKVVVFSKSYCPYCKLAKDVFEKVK-QPIKVIELNERDDGNTIQDNLAQLTG 330
           F++     + +VVFSK+ C +  +AK +   V    + V EL +R+DG+ IQD L +LTG
Sbjct: 9   FVRSVTRSNNIVVFSKTACSFSIMAKKLLRDVGVSEMVVYELEQREDGHFIQDALKELTG 68

Query: 331 FRTVPQVFINGNCVGGGSDVKALYESGKLEPML 429
             TVP VF+ G  +GGG +   LY+SGKL+ +L
Sbjct: 69  RGTVPNVFVKGQSIGGGMETAELYQSGKLKQLL 101


>SB_45748| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)
          Length = 152

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = +1

Query: 157 IKEAISKDKVVVFSKSYC--PYCKLAKDVFEKVKQP--IKVIELNERDDGNTIQDNLAQL 324
           I E + KDKVVVF K     P C  +  V + ++     K    N  DD   ++  + + 
Sbjct: 41  IGETVKKDKVVVFMKGVPSQPMCGFSNAVVQILRMHGVDKFTSFNILDD-EELRSRIKEF 99

Query: 325 TGFRTVPQVFINGNCVGGGSDVKALYESGKL 417
           + + T+PQV+I G  VGG   +  +++ G L
Sbjct: 100 SEWPTIPQVYIGGEFVGGCDIMIKMHQEGDL 130


>SB_45745| Best HMM Match : Glutaredoxin (HMM E-Value=0.00065)
          Length = 152

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = +1

Query: 157 IKEAISKDKVVVFSKSYC--PYCKLAKDVFEKVKQP--IKVIELNERDDGNTIQDNLAQL 324
           I E + KDKVVVF K     P C  +  V + ++     K    N  DD   ++  + + 
Sbjct: 41  IGETVKKDKVVVFMKGVPSQPMCGFSNAVVQILRMHGVDKFTSFNILDD-EELRSRIKEF 99

Query: 325 TGFRTVPQVFINGNCVGGGSDVKALYESGKL 417
           + + T+PQV+I G  VGG   +  +++ G L
Sbjct: 100 SEWPTIPQVYIGGEFVGGCDIMIKMHQEGDL 130


>SB_1233| Best HMM Match : DUF547 (HMM E-Value=0)
          Length = 382

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 26/85 (30%), Positives = 46/85 (54%)
 Frame = +1

Query: 175 KDKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVF 354
           K +V +FS + CP+C  AK      +  ++ +++N        Q+ + + +G RTVPQ+F
Sbjct: 2   KGRVTIFSITGCPFCVRAKTKLRD-ELNLEFVDINLDRHPERRQEAMER-SGKRTVPQIF 59

Query: 355 INGNCVGGGSDVKALYESGKLEPML 429
            N   VGG  D+  L  + K+E ++
Sbjct: 60  FNNIHVGGFDDLDKL-SADKMEELI 83


>SB_52133| Best HMM Match : Glutaredoxin (HMM E-Value=4.4e-17)
          Length = 374

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 22/73 (30%), Positives = 37/73 (50%)
 Frame = +1

Query: 217 CKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVFINGNCVGGGSDVKA 396
           C+  K +F+ +   I   ++    +     D   Q      VPQVF+NG C+GG  ++  
Sbjct: 239 CRFVKKLFDNLNVEIDERDIFIHKEHQVELDRRLQEEK-APVPQVFVNGICLGGSKELLH 297

Query: 397 LYESGKLEPMLIG 435
           L E+G+L+ +L G
Sbjct: 298 LNETGELKELLSG 310


>SB_20536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 36

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +1

Query: 340 VPQVFINGNCVGGGSDVKALYESGKLEPML 429
           VPQV ING  +GGG++ + L  SGKL  ML
Sbjct: 1   VPQVHINGKFIGGGTETEDLERSGKLLEML 30


>SB_31341| Best HMM Match : UDP-g_GGTase (HMM E-Value=0)
          Length = 1031

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 277 NERDDGNTIQDNLAQLTGFRTVPQVFING 363
           +E DDG          TGF+T PQV +NG
Sbjct: 490 SENDDGRKAWKRFHDRTGFQTTPQVVVNG 518


>SB_43439| Best HMM Match : AhpC-TSA (HMM E-Value=9.80909e-44)
          Length = 246

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/72 (27%), Positives = 38/72 (52%)
 Frame = +1

Query: 181 KVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTVPQVFIN 360
           +V + +K  C +C  AK   +   + ++  E+    +G +   +L  ++G  T PQVF++
Sbjct: 172 RVTLITKPGCSHCTRAKVALQN--KGLRYEEIVLGVNGVSFS-SLNAISGQGTTPQVFVD 228

Query: 361 GNCVGGGSDVKA 396
           G  VG   D++A
Sbjct: 229 GVHVGTADDLEA 240


>SB_38289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 560

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
 Frame = +1

Query: 214 YCKLAKDVFEKVKQPIKVIELNERDDGNT---IQDNLAQLTGFRT 339
           Y KLA D+ E ++  IK+I+L ER+  NT   +Q  + +   +RT
Sbjct: 236 YEKLASDLLEWIE--IKIIQLGEREFANTLLGVQQQMLEFNQYRT 278


>SB_17581| Best HMM Match : HHH (HMM E-Value=4.2)
          Length = 361

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +1

Query: 178 DKVVVFSKSYCPYCKLAKDVFEKVKQPIKVIELNERDDGNTIQDNLAQLTGFRTV 342
           DK     + Y   C+  +  F K   P+K+  LN+  +G  I D +  L G+  V
Sbjct: 80  DKTKAVKEEYKRQCEANEQFFVKEAAPVKMAPLNDPSEGKIILD-IKGLKGYELV 133


>SB_30152| Best HMM Match : Ank (HMM E-Value=1.8e-23)
          Length = 393

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 378 TSHTVAIYKDLRYSSETSQLCEIILNGVS 292
           T HT +IY  L+Y   + + CE IL+ ++
Sbjct: 326 TPHTKSIYMALKYKVHSFKACETILDAIT 354


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,751,214
Number of Sequences: 59808
Number of extensions: 362753
Number of successful extensions: 861
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)