Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_H23
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|... 120 2e-28
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 36 0.005
SPBC11G11.01 |fis1||mitochondrial fission protein Fis1 |Schizosa... 30 0.25
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 29 0.59
SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr 2|||Ma... 29 0.59
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 28 1.4
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 4.1
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.1
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 5.5
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 5.5
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 26 5.5
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 25 7.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 7.2
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 25 7.2
>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
1|||Manual
Length = 863
Score = 120 bits (289), Expect = 2e-28
Identities = 67/172 (38%), Positives = 100/172 (58%), Gaps = 1/172 (0%)
Frame = +2
Query: 140 QILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMAAGLQLKNH 319
+ L +T+SPD N A + L++AA T+F ++ +L+ L + RMAAGL LKN
Sbjct: 5 EFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLALKNA 64
Query: 320 LTSKDPTLKQQYQQRWLALAXDVRLYIKENILPAIGTXNSRP-SSAAQCVAYVAVAELPV 496
+T+++ K +YQQ W +L +++ +K L +G+ + SAAQ VA +A EL
Sbjct: 65 ITAREEARKLEYQQLWQSLPVEIKQQVKSLALQTLGSSEHQAGQSAAQLVAAIAAYELAT 124
Query: 497 XQWNDLIPILVENVVHVQSTELKKEATLEAIGYICXDIDAEVLPERSNQILT 652
QW DL+ LV NV Q + LK+ +L+ IGYIC + EVL +SN ILT
Sbjct: 125 NQWPDLMVTLVANVGEGQPSALKQH-SLQTIGYICESVSPEVLSAQSNAILT 175
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 35.9 bits (79), Expect = 0.005
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Frame = +2
Query: 110 MHAETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVAR 289
M A+ TL L Q+L ++++PD ++ A R L+ + + + ++ N QV +
Sbjct: 1 MDAQFTLELTQLLFQSIAPDTTQITEATRALETKYLKEPGSLLSLFH-IMGTCENPQVRQ 59
Query: 290 MAAGLQLKNHLTSKDPTLKQQYQQRWLALAXDVRLYIKENILP-AIGTXNSRPSSA-AQC 463
+AA ++ + L +Y W ++ DV+ I+ N+L + S A +
Sbjct: 60 LAA-IEARK--------LCHKY---WSSVDADVQNQIRSNLLDITLKEPESIVRHAFGRV 107
Query: 464 VAYVAVAELPVXQWNDLIPILVE 532
+A +A +LP +WN+L LV+
Sbjct: 108 IAALAKLDLPEGKWNELSAFLVQ 130
>SPBC11G11.01 |fis1||mitochondrial fission protein Fis1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/72 (18%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 302 LQLKNHLTSKDP--TLKQQYQQRWLALAXDVRLYIKENILPAIGTXNSRPSSAAQCVAYV 475
LQ+K ++ P TL+ ++ W + D ++++ + P +C+ Y+
Sbjct: 25 LQIKEQYDAEQPLITLQTKFNLAWALVRSDSTQHVQQGLSLFCSIYKDSPERRLECLYYI 84
Query: 476 AVAELPVXQWND 511
A++ + Q+ +
Sbjct: 85 ALSHYKLKQYEE 96
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 29.1 bits (62), Expect = 0.59
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 191 VRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMAAGLQLKNHLTSKDPTLK 346
++Y++ A T + + LL GG+ +A++ + K HL S D TL+
Sbjct: 191 LKYVESLAVALRTESVTWVRYFLLMGGHIVLAKILQAIHEKKHLKSPDITLE 242
>SPBC16G5.07c |||prohibitin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 354
Score = 29.1 bits (62), Expect = 0.59
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +2
Query: 116 AETTLTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMA 295
A T + I +L ++ + LEA Y+ TNF K + +++ S V+ M
Sbjct: 266 ASATASGIAVLADSIKKQEHGLEAVSLYIAQQYITNFGKLAKASNSMIVPASTSDVSGMV 325
Query: 296 A 298
A
Sbjct: 326 A 326
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/48 (27%), Positives = 31/48 (64%)
Frame = +3
Query: 57 KNRIESVFCNINLRIVKQCTQKQH*RLYKYLRRQFHLIEMNWKQQLDT 200
++++E+ N N +++K+ +++Q R YK + ++ IE+N Q+D+
Sbjct: 742 RSKLEAYHINCN-KVIKEFSKRQTAR-YKIIEKELAQIEVNLVSQIDS 787
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = +3
Query: 522 FL*KMLFMSNLLNSKRKRLWRLLATFVXILMLKYYQKEVIKFL 650
F+ + +F+++LLN +++W+ LA + ++ +K+L
Sbjct: 894 FIPQRMFITDLLNVIGRKIWKKLAEILGYTSRRFLSSAEVKWL 936
>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 355 STKMAGFGXRCSTLYKRKYITCYRNXE 435
S K+AG S + ++Y+T YR E
Sbjct: 110 SQKLAGLSHSTSDYFSKEYLTAYRRSE 136
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 92 LKNSETMHAETTLTLIQILEKTVSPDRNELEAAVRYLDH 208
+KN + H +T L + IL++ D + +RYL H
Sbjct: 549 IKNRQKFHGQT-LVEVGILKRLCEADPADKNNVIRYLSH 586
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1
Query: 195 LTAASNSFRSGETVFSSICISVNVVSACI 109
LTA + S +G ++ S+I ++ N++SA I
Sbjct: 117 LTAYATSAFAGHSLLSTIAVANNIISAAI 145
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 79 KTDSILFFEK*KPADDGRTLMKYWLS 2
+ D+I EK K DD ++KYWLS
Sbjct: 471 QNDTINKVEKVKHFDDSIRVLKYWLS 496
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 283 HLTVTTLEKDIGQHFDECCEICGGSMVEV 197
+L TT++K FD ++CGG+ + +
Sbjct: 627 YLLNTTVKKQFSAFFDGFMKVCGGNAISL 655
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 395 YIKENILPAIGTXNSRPSSAA 457
Y+ NI PA+G S PS+ A
Sbjct: 1754 YVPSNIAPAMGAMQSAPSAEA 1774
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 25.4 bits (53), Expect = 7.2
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +3
Query: 537 LFMSNLLNSKRKRLWR 584
+F+ N+L KR++LWR
Sbjct: 239 VFVENVLTKKRRKLWR 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,122
Number of Sequences: 5004
Number of extensions: 47881
Number of successful extensions: 146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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