Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H23
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)                114   7e-26
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)                 34   0.12 
SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_14981| Best HMM Match : GatB_Yqey (HMM E-Value=0.8)                 28   5.8  
SB_6194| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_27633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
          Length = 681

 Score =  114 bits (274), Expect = 7e-26
 Identities = 57/111 (51%), Positives = 75/111 (67%)
 Frame = +2

Query: 128 LTLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMAAGLQ 307
           + L ++LE TVSPD  EL+AA +YL+ AA  N   F+ +L + L  G  SQVARMAAGLQ
Sbjct: 1   MDLTKVLEATVSPDLAELQAAQKYLEEAAQVNLPQFLLVLVNELADGSKSQVARMAAGLQ 60

Query: 308 LKNHLTSKDPTLKQQYQQRWLALAXDVRLYIKENILPAIGTXNSRPSSAAQ 460
           LKN LTSKD  ++ QYQQRWL L  +VR ++K+  L  +G   +RP+ A Q
Sbjct: 61  LKNQLTSKDDIVRAQYQQRWLGLDKEVRDHVKKMSLATLGNETARPAIAPQ 111


>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
          Length = 921

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
 Frame = +2

Query: 272 NSQVARMAAGLQLKNHLTS--KDPTLKQQYQQRWLALAXDVRLYIKENILPAIGTXNSRP 445
           NS+ AR A  LQ+ N+  S  +D T+K     +  A A D+ + I  + +  I   +S P
Sbjct: 235 NSENARHA--LQISNYADSLVRDTTIKAVKDVQTYAFAEDLSIDIIGDAMSEIPQTDSVP 292

Query: 446 SSAAQCVAYVAVAELPVXQW-NDLIPILVENVVHVQSTELKKEATLEAIGYICXDIDAEV 622
           SS++   +   + E  +  + ++L+  ++EN   V   E  K+        IC D    V
Sbjct: 293 SSSSSSESSELLHEKQLDIFVDELLKEVIENA--VSDVEQIKDFANNLSDIICADSTITV 350

Query: 623 LPER 634
           + ER
Sbjct: 351 ITER 354


>SB_33596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 881

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 320 LTSKDPTLKQQYQQRWLALAXDVRLYIKENILPAIGTXNS--RPSSAAQCVAYVAVA 484
           L  K+ +LK+Q+ QR    +  VR  +   ++P  GT  S  +P       A +A A
Sbjct: 284 LNEKERSLKEQFMQRQDKKSAPVRRVVMPTVIPTQGTQQSGPKPDDPVSTAAAIAAA 340


>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1065

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/91 (24%), Positives = 39/91 (42%)
 Frame = +2

Query: 131 TLIQILEKTVSPDRNELEAAVRYLDHAATTNFTTFIKMLSDVLLQGGNSQVARMAAGLQL 310
           T+ ++L  T+ P+  +    V   D    TNF  + + +S+      +   A   AGL++
Sbjct: 296 TITKVLGVTLVPEPRKSLYLVASEDEFLKTNFNNYYRTMSEYKKPFEDEDSAVRKAGLEI 355

Query: 311 KNHLTSKDPTLKQQYQQRWLALAXDVRLYIK 403
            +  T   P     Y+Q+WL    D   + K
Sbjct: 356 VSMKTGIVPC---PYRQKWLKEKGDPSKFAK 383


>SB_14981| Best HMM Match : GatB_Yqey (HMM E-Value=0.8)
          Length = 489

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
 Frame = +2

Query: 239 KMLSDVLLQGGNSQVARMAAGLQ---LKNHLTSKDPTLKQQYQQRWLALAXDVRL----- 394
           K++ + + +G NS+   ++ G     L    +  +P ++++  + +  +  D  +     
Sbjct: 95  KIIKEAMYKGNNSRTPTLSQGALIYLLDLFCSGSNPAVRERSAELFAKMMSDKLIGPRVK 154

Query: 395 YIKENILPAIGTXNSRPSSAAQCVAYVAVAELPVXQWND 511
            I    LPAI     R S+ A    + A  E P   WND
Sbjct: 155 IILAKFLPAIFMDAMRDSAEASVHMFEATQENPELIWND 193


>SB_6194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
 Frame = +2

Query: 239 KMLSDVLLQGGNSQVARMAAGLQ---LKNHLTSKDPTLKQQYQQRWLALAXDVRL----- 394
           K++ + + +G NS+   ++ G     L    +  +P ++++  + +  +  D  +     
Sbjct: 17  KIIKEAMYKGNNSRTPTLSQGALIYLLDLFCSGSNPAVRERSAELFAKMMSDKLIGPRVK 76

Query: 395 YIKENILPAIGTXNSRPSSAAQCVAYVAVAELPVXQWND 511
            I    LPAI     R S+ A    + A  E P   WND
Sbjct: 77  IILAKFLPAIFMDAMRDSAEASVHMFEATQENPELIWND 115


>SB_27633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 483

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -1

Query: 252 SDNILMNVVKFVVAAWSRYLTAASNSFRSGETVFSSICISVNVVSA-CIVSL 100
           SD +L   +  + AAW+ YLT       +   +F+ I I   + S+ C+VSL
Sbjct: 60  SDLLLGLTMNAIYAAWNGYLTEKQKVSATVREIFAWIFIFTAMTSSLCLVSL 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,408,273
Number of Sequences: 59808
Number of extensions: 340943
Number of successful extensions: 1025
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)