Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H23
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.48 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   0.64 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 121 FCVHCFTILKFMLQKTDSILFFEK*KPADDGRTLMKYW 8
           F + C   L   L+K +S LF  + +PAD    L K W
Sbjct: 72  FLLQCLEDLDCSLRKLNSRLFVIRGQPADALPKLFKEW 109


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 521 LVLDHSIVXLGAQLLPHTPHTVLLNLDDYSXF 426
           LV    ++ LG  +LPH P++  L   DY  F
Sbjct: 253 LVTRQKLLELGWDVLPHPPYSPDLAPSDYFLF 284


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/30 (23%), Positives = 17/30 (56%)
 Frame = +2

Query: 494 VXQWNDLIPILVENVVHVQSTELKKEATLE 583
           + QW+  +P++V+  + +   +L K  T +
Sbjct: 192 IFQWDPDVPLVVDENIELPQLQLVKNYTAD 221


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 488 LPVXQWNDLIPILVENVVHVQSTELKKEATLEAIGYICXDIDA 616
           LPV Q+NDLI   +  V  +Q+ ++ +  TL    Y+  D+DA
Sbjct: 452 LPVYQYNDLI---LPGVT-IQNVDVSQLVTLFTDFYV--DLDA 488


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 192 LDTSTMLPPQISQHSSKCCPMS 257
           L+   M+PP I Q S    PM+
Sbjct: 575 LEVQVMVPPTIQQFSFTKLPMN 596


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,088
Number of Sequences: 438
Number of extensions: 3182
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)