Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H22
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   9.5  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    25   9.5  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    25   9.5  
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    25   9.5  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 499  TVSVQ*PILQLFQGSYSLH 443
            T+SV   IL+LF+G Y+LH
Sbjct: 1219 TLSVLDQILKLFKGRYTLH 1237


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 126 ANNKIRDTIXFNNLTNSKKPR 64
           +N KI DT+ FN+ ++ +KP+
Sbjct: 192 SNAKITDTMLFNHFSSIQKPK 212


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 445 VMSSSPEIVAIWAIGQKLWKKDLPXTYEALAAYSWT 552
           V SS    + +W +  K  K DLP   + + A  W+
Sbjct: 447 VSSSQDTTLKVWDVRSKKMKFDLPGHEDQVFAVDWS 482


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 82  KFQKTKRYQKIQTKVCGAIASSVV 11
           KFQ+  R +K+Q++   +IASS +
Sbjct: 100 KFQRNSRIKKLQSEDASSIASSTL 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,913
Number of Sequences: 5004
Number of extensions: 43257
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)