Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H22
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14110.1 68417.m02178 COP9 signalosome subunit, putative / CS...    80   1e-15
At5g15540.1 68418.m01819 expressed protein low similarity to DNA...    28   4.7  
At1g48650.1 68414.m05445 helicase domain-containing protein cont...    27   8.2  

>At4g14110.1 68417.m02178 COP9 signalosome subunit, putative / CSN
           subunit, putative (CSN8) CSN8, FUS7; identical to cDNA
           CSN complex subunit 8 (CSN8)  GI:18056672
          Length = 197

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 36/94 (38%), Positives = 51/94 (54%)
 Frame = +1

Query: 364 YAQLLXIYLYQNDLCNAKFLWXXIPQNVMSSSPEIVAIWAIGQKLWKKDLPXTYEALAAY 543
           YA  L  Y Y +D  +A+FLW  IP  +    PE+VA W IGQKLW  D    YEA+  Y
Sbjct: 42  YAIHLLGYFYVDDCDSARFLWKRIPTAIKERKPEVVAAWGIGQKLWTHDYAGVYEAIRGY 101

Query: 544 SWTEPVSNIIRALEENVRXRTLNLIGRSYSSIKI 645
            W++   +++ A  +    R   L+  +YS+I I
Sbjct: 102 DWSQEAKDMVAAFSDLYTKRMFQLLLSAYSTITI 135


>At5g15540.1 68418.m01819 expressed protein low similarity to DNA
           repair and meiosis protein Rad9 [Coprinus cinereus]
           GI:1353390, SP|Q09725 Sister chromatid cohesion protein
           mis4 {Schizosaccharomyces pombe}
          Length = 1755

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 108 DTIXFNNLTNSKKPRGTKKYK 46
           +TI  N L+ SKKP+G KK K
Sbjct: 204 ETITMNELSASKKPKGKKKRK 224


>At1g48650.1 68414.m05445 helicase domain-containing protein contains
            similarity to DEIH-box RNA/DNA helicase [Arabidopsis
            thaliana] GI:5881579; contains Pfam profiles PF04408:
            Helicase associated domain (HA2), PF00271: Helicase
            conserved C-terminal domain, PF00035: Double-stranded RNA
            binding motif
          Length = 1197

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 123  NNKIRDTIXFNNLTNSKKPRGTKKYKQK 40
            NN+ R  + FN L    KP G+KK  +K
Sbjct: 1126 NNQFRSMVTFNGLDFMGKPCGSKKNAEK 1153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,170,978
Number of Sequences: 28952
Number of extensions: 209127
Number of successful extensions: 417
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)