Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_H19
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 231 5e-62
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 100 2e-22
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 93 4e-20
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 87 2e-18
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 85 8e-18
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 59 6e-10
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 57 2e-09
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 51 2e-07
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 49 5e-07
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 47 3e-06
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 44 3e-05
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 36 0.005
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 34 0.021
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi... 33 0.027
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 32 0.063
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.44
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.59
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 28 1.0
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 28 1.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 1.8
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 27 2.4
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 27 3.1
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 27 3.1
SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase |Schizosacchar... 25 7.2
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 7.2
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 7.2
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 9.5
SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.5
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 9.5
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 231 bits (566), Expect = 5e-62
Identities = 108/168 (64%), Positives = 138/168 (82%)
Frame = +1
Query: 151 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQL 330
R+ A + Y+ L++H+E +S+LK+ R +DL K+YDK+E+D+K+LQSVGQI+GEVLKQL
Sbjct: 4 RDTALEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQL 63
Query: 331 TEXKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSH 510
+FIVKA++GPRYVVGCR +D++ L G RV+LDMTTLTIMR LPREVDPLVYNMS
Sbjct: 64 DSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSI 123
Query: 511 EDPGDVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
EDPGD++++ +G L EQI +L EVIELPL NPELF+RVGI PPKG LL
Sbjct: 124 EDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLL 171
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 100 bits (240), Expect = 2e-22
Identities = 60/171 (35%), Positives = 91/171 (53%), Gaps = 4/171 (2%)
Frame = +1
Query: 154 EKAFQDYRKKLMEHK----EVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVL 321
E Q Y +K+ + + + L+ Q L + +++ LQ G VGEV+
Sbjct: 14 ENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVI 73
Query: 322 KQLTEXKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYN 501
K + + K +VK +YVV +D ++K RVAL + +++ LP +VDPLV
Sbjct: 74 KTMGKNKVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSL 133
Query: 502 MSHEDPGDVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
M E D TY +G L++QI ++ EVIELP+ +PELF +GI PKG LL
Sbjct: 134 MMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILL 184
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 92.7 bits (220), Expect = 4e-20
Identities = 51/162 (31%), Positives = 90/162 (55%), Gaps = 2/162 (1%)
Frame = +1
Query: 175 RKKLMEHKEVESRLKEG--RDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEXKFI 348
R K +E + L+EG ++ K L ++ +++ ++K +QSV ++G+ L+ + + I
Sbjct: 12 RWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAI 71
Query: 349 VKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDV 528
V +T G YVV LD+ LK VAL + ++ LP E D + + ++ DV
Sbjct: 72 VGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDV 131
Query: 529 TYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
+Y+ +G L Q ++ E +ELPL +L+ ++GI PP+G LL
Sbjct: 132 SYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLL 173
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 87.0 bits (206), Expect = 2e-18
Identities = 45/159 (28%), Positives = 86/159 (54%)
Frame = +1
Query: 178 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEXKFIVKA 357
+++ +H +E + +++LK ++ + N + ++ VG L+++ + + +
Sbjct: 73 QRIHDHLLMEEEYVQNQERLKPQDERTQEERNRVDEIRGTPMSVG-TLEEIIDDDHAIVS 131
Query: 358 TNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYS 537
T GP Y V +DK+ L+ G V L ++I+ L + DP++ M + +Y+
Sbjct: 132 TAGPEYYVSIMSFVDKDMLEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYA 191
Query: 538 AIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
IG L+ QI ++ E +ELPL +PEL+ +GI PPKG +L
Sbjct: 192 DIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVIL 230
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 85.0 bits (201), Expect = 8e-18
Identities = 40/104 (38%), Positives = 61/104 (58%)
Frame = +1
Query: 343 FIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPG 522
+++ ++VV ++ ++ G RV D I LP ++DP V M E+
Sbjct: 115 YVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKP 174
Query: 523 DVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
DVTY +G +EQI +L EV+ELPL++PE FV++GI PPKG +L
Sbjct: 175 DVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIML 218
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 58.8 bits (136), Expect = 6e-10
Identities = 29/86 (33%), Positives = 47/86 (54%)
Frame = +1
Query: 397 LDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGXLQEQITQLX 576
++ +L G + ++ + I+ LP E D V M ++ YS IG L +QI +L
Sbjct: 139 VEPEELHPGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELF 198
Query: 577 EVIELPLMNPELFVRVGITPPKGCLL 654
E I LP+ + F ++G+ PPKGCL+
Sbjct: 199 EAIVLPMQQADKFRKLGVKPPKGCLM 224
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 57.2 bits (132), Expect = 2e-09
Identities = 25/46 (54%), Positives = 32/46 (69%)
Frame = +1
Query: 517 PGDVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
P VT+S+IG LQ QI Q+ +++ELP NPELF I PP+G LL
Sbjct: 273 PSAVTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLL 318
Score = 41.1 bits (92), Expect = 1e-04
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = +1
Query: 511 EDPGDVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
E P +V +S IG +E +L E +E PL + E F R+G+ PPKG LL
Sbjct: 541 ESP-NVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLL 587
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 50.8 bits (116), Expect = 2e-07
Identities = 22/59 (37%), Positives = 35/59 (59%)
Frame = +1
Query: 478 EVDPLVYNMSHEDPGDVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
E +P+ +V Y IG + Q+ Q+ E++ELPL +P+LF +GI PP+G L+
Sbjct: 205 EGEPINREDEESSLAEVGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILM 263
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +1
Query: 523 DVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCL 651
+V + IG L+E +L E +++P+M E F+R G+TP KG L
Sbjct: 493 NVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVL 535
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 49.2 bits (112), Expect = 5e-07
Identities = 20/50 (40%), Positives = 33/50 (66%)
Frame = +1
Query: 505 SHEDPGDVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
+ E P D++ S IG L + I +L E++ +P+ +PE++ GI PP+G LL
Sbjct: 164 NREPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLL 213
Score = 34.7 bits (76), Expect = 0.012
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +1
Query: 517 PGDVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
PG V+++ IG L+ +L I P+ PEL+ VGI+ P G LL
Sbjct: 487 PG-VSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLL 531
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 46.8 bits (106), Expect = 3e-06
Identities = 19/43 (44%), Positives = 33/43 (76%)
Frame = +1
Query: 523 DVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCL 651
++ +++IG L++ I QL E++ LPL+ PE+F+ + ITPP+G L
Sbjct: 368 NLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVL 410
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 43.6 bits (98), Expect = 3e-05
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = +1
Query: 526 VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCL 651
+++ ++G L I QL E++ LPL+ PE+F R + PP+G L
Sbjct: 263 LSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVL 304
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 136 DMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYD 261
+++PL +AFQD K L + V S+L + + D K+ D
Sbjct: 544 ELKPLLNEAFQDIEKTLQKLMPVASKLNPLEEVMYDDPKEND 585
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 35.9 bits (79), Expect = 0.005
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 526 VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
V + IG L+E T L + ++LPL PELF + G+ P G LL
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLL 693
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 33.9 bits (74), Expect = 0.021
Identities = 18/69 (26%), Positives = 38/69 (55%)
Frame = +1
Query: 124 ASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQ 303
A+ SD++ + + Y ++L + K++ ++ + Q + + ++Y E L ALQ +
Sbjct: 531 ANLSDVKAKVSEIRKAYDEELAKAKQISLDIETNKAQTEQVNREYSILEATLNALQKQNK 590
Query: 304 IVGEVLKQL 330
GEVL+Q+
Sbjct: 591 QKGEVLEQV 599
>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
unnamed|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 33.5 bits (73), Expect = 0.027
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = +1
Query: 127 STSDMEPLREKAFQDYRK-KLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ 291
S + +E ++K F+ Y+K + E K+ E R+K+ LKD T +K + K+++
Sbjct: 48 SMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEKSLKDETMDDEKRKQCEKSMR 103
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 32.3 bits (70), Expect = 0.063
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 154 EKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDL 279
+K +D RKKL E +E ES L+ R++L+ +S NDL
Sbjct: 571 DKLVEDVRKKLQEKEEAESSLRSVRERLEIRISLSVQSINDL 612
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 29.5 bits (63), Expect = 0.44
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 145 PLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQS 294
PL YRK L K+V+ L E + LK L K+ K +ND + L++
Sbjct: 184 PLYPNGQPKYRKILENGKKVKYLLDENGEILKRLVKKEKKLKNDNERLEN 233
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.1 bits (62), Expect = 0.59
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 133 SDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLK-ALQSVGQIV 309
S E +RE+ Q KKL + + ++SRL + R Q++ Y S + LK + S+ Q V
Sbjct: 404 SSCETIREEN-QKNIKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQLKDEITSLKQTV 462
Query: 310 GE 315
E
Sbjct: 463 SE 464
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +1
Query: 505 SHEDPGDVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
+HE + ++ + + E ++ E ++ L NP+ + R+G P+G +L
Sbjct: 286 NHETDIKIKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIPRGAIL 334
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 28.3 bits (60), Expect = 1.0
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = -2
Query: 648 TSFGWSDTDSNKQLWVH*GKFNHLXQLCNLFLKTSYGGIGHVTRI-LMTHVVN*GINLSR 472
TSFG+++ +SN+Q F+ + N F+ G TR+ L+T V N G+
Sbjct: 179 TSFGFAEFESNEQ-------FSRALEALNDFVVPPLYEGGPSTRLSLITDVENEGLYREW 231
Query: 471 QMSHYCKSSHVEGNSCSSFKLVLVKL 394
Q S Y ++ E N + L ++
Sbjct: 232 QTSRYARNKQKEINILQQIRFNLERI 257
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 190 EHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQ 327
E + +R+ + ++Q+KDL+ D DL+ L+S+ V + K+
Sbjct: 1616 ERLSLTTRMLDLQNQVKDLSNIKDSLSEDLRTLRSLEDSVASLQKE 1661
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 27.1 bits (57), Expect = 2.4
Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Frame = +1
Query: 226 RDQLKDLTKQYDKSENDLKAL-QSVGQIVGEVL-KQLTEXKFIVKAT 360
RD+L+DL+++ + +NDL+ L Q+V E++ LT+ K I++ +
Sbjct: 40 RDELEDLSEEDLQLKNDLELLVQAVQDATPELVGSSLTQLKEIIRTS 86
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +1
Query: 172 YRKKLMEHKEVESR----LKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTE 336
Y+ K + HKEVE R + EG +L ++ +K++ + LQ Q + LK++ E
Sbjct: 86 YKAKRLSHKEVERRRREAISEGIKELANIVPGCEKNKGSI--LQRTAQYI-RSLKEMEE 141
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -3
Query: 305 ICPTLCKAFRSFSLLSYCLVKSFSWSRP---SLSRDSTSLCSMSFFL*SWKA 159
+ PTL + RS S+L + L KSF+ + P + +R T +MS S+ A
Sbjct: 410 VTPTLHRNERSMSVLPFQLAKSFTSALPRRLTFNRTHTKASTMSLPYLSYNA 461
>SPCC576.01c ||SPCPB1C11.04c|sulfonate dioxygenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 136 DMEPLREKAFQDYRKKLMEHKEV 204
D+ L ++ F+D RK L EH+ V
Sbjct: 58 DLNNLSDEQFEDIRKALFEHQVV 80
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = -2
Query: 654 QQTSFGWSDTDSNKQLWVH*GKFNHLXQLCNLFLKTSYGGIGHVT 520
+Q+SFGW D++ K++ + L +C +F KTS +G ++
Sbjct: 65 RQSSFGWDDSEKLKEM-----EMEKLEYIC-IFEKTSKKLVGFLS 103
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 328 AVSRLLQLFVQHFVRLSGHFHSCHIVWSNLLV 233
A + +LQL ++H R++ + H+ + NL V
Sbjct: 864 AHAEILQLIIRHLARVAAYSHANRMTSKNLAV 895
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 133 SDMEPLREKAFQDYRKKLME-HKEV-ESRLKEGRDQLKDLTKQYDKSENDLKA 285
S ++ + KA ++ RK+ E KE+ +SRL+E + K L K + ++LKA
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKKLAKYTEVIISNLKA 403
>SPBC32H8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 117
Score = 25.0 bits (52), Expect = 9.5
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Frame = +1
Query: 148 LREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSE-----NDLKALQSVGQIVG 312
LRE FQ + K + + L RDQ+ DLTK E N LK + S ++
Sbjct: 17 LRENVFQPVIDE--RTKRLSAHL---RDQVNDLTKSSSSKEEGIADNSLKEVSS-SEVSD 70
Query: 313 EVLKQLTEXKFIVKATNGPRYVVGCRRQLDKNKLKGGTR 429
V ++ + K +T+GPR R + K LK G R
Sbjct: 71 NVGMEVDQPKV---STSGPR--DNNRNKWAKKHLKKGKR 104
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 175 RKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKA 285
R +L++ + KE D LK +YD+ EN+LKA
Sbjct: 396 RNQLLQINRNINSTKENSDYLKT---EYDEMENELKA 429
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,420
Number of Sequences: 5004
Number of extensions: 44790
Number of successful extensions: 154
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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