Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_H19
(655 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 239 9e-64
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 239 9e-64
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 106 1e-23
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 105 3e-23
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 92 3e-19
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 92 3e-19
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 90 1e-18
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 89 2e-18
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 88 6e-18
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 61 5e-10
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 61 5e-10
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 54 8e-08
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 52 3e-07
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 52 3e-07
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 46 2e-05
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 40 0.002
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 39 0.003
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 39 0.003
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 39 0.003
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 37 0.013
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 36 0.018
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 36 0.024
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 36 0.024
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 35 0.054
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 35 0.054
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 35 0.054
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 34 0.072
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 34 0.072
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 34 0.072
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 34 0.095
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 33 0.17
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 33 0.17
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 33 0.22
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 31 0.51
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 31 0.51
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 31 0.88
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 31 0.88
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 31 0.88
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c... 30 1.5
At2g33793.1 68415.m04145 expressed protein 30 1.5
At1g51940.1 68414.m05855 protein kinase family protein / peptido... 30 1.5
At3g19670.1 68416.m02492 FF domain-containing protein / WW domai... 29 2.0
At3g49840.1 68416.m05449 proline-rich family protein contains pr... 29 2.7
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 29 3.6
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 28 4.7
At5g60070.1 68418.m07532 ankyrin repeat family protein contains ... 28 6.2
At5g48660.1 68418.m06022 expressed protein ; expression supporte... 28 6.2
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 28 6.2
At5g11260.1 68418.m01315 bZIP protein HY5 (HY5) identical to HY5... 27 8.2
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 27 8.2
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 27 8.2
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 239 bits (586), Expect = 9e-64
Identities = 110/168 (65%), Positives = 139/168 (82%)
Frame = +1
Query: 151 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQL 330
R A +YRKKL++HKE+ESR++ R+ L+ K+++K+E+DLK+LQSVGQI+GEVL+ L
Sbjct: 11 RTAAVSEYRKKLLQHKELESRVRTARENLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPL 70
Query: 331 TEXKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSH 510
+ IVKA++GPRYVVGCR ++DK KL GTRV LDMTTLTIMR LPREVDP+VYNM H
Sbjct: 71 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLH 130
Query: 511 EDPGDVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
EDPG+++YSA+G L +QI +L E IELPLMNPELF+RVGI PPKG LL
Sbjct: 131 EDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLL 178
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 239 bits (586), Expect = 9e-64
Identities = 111/168 (66%), Positives = 138/168 (82%)
Frame = +1
Query: 151 REKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQL 330
R A DYRKKL+ HKE+ESR++ R+ L+ K+++K+E+DLK+LQSVGQI+GEVL+ L
Sbjct: 11 RTAAVTDYRKKLLHHKELESRVRTARENLRAAKKEFNKTEDDLKSLQSVGQIIGEVLRPL 70
Query: 331 TEXKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSH 510
+ IVKA++GPRYVVGCR ++DK KL GTRV LDMTTLTIMR LPREVDP+VYNM H
Sbjct: 71 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLH 130
Query: 511 EDPGDVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
EDPG+++YSA+G L +QI +L E IELPLMNPELF+RVGI PPKG LL
Sbjct: 131 EDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLL 178
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 106 bits (254), Expect = 1e-23
Identities = 63/177 (35%), Positives = 92/177 (51%)
Frame = +1
Query: 124 ASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQ 303
A+ E L++ Q + + ++ + L Q +L + +L+ LQ G
Sbjct: 24 AAAKQGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGS 83
Query: 304 IVGEVLKQLTEXKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREV 483
VGEV+K + + K +VK +YVV + +D K+ TRVAL + + LP +V
Sbjct: 84 YVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKV 143
Query: 484 DPLVYNMSHEDPGDVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
DPLV M E D TY IG L +QI ++ EVIELP+ +PELF +GI PKG LL
Sbjct: 144 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLL 200
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 105 bits (251), Expect = 3e-23
Identities = 64/163 (39%), Positives = 89/163 (54%), Gaps = 1/163 (0%)
Frame = +1
Query: 169 DYRKKLMEHKEVE-SRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEXKF 345
D ++L K +RL+ R++L + +L+ LQ G VGEV+K + + K
Sbjct: 41 DELQRLQREKSYNLNRLEAQRNELNSRVRML---REELQLLQEPGSYVGEVVKVMGKNKV 97
Query: 346 IVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGD 525
+VK +YVV + +D KL TRVAL + + LP +VDPLV M E D
Sbjct: 98 LVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPD 157
Query: 526 VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
TY IG L +QI ++ EVIELP+ +PELF +GI PKG LL
Sbjct: 158 STYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLL 200
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 91.9 bits (218), Expect = 3e-19
Identities = 48/159 (30%), Positives = 89/159 (55%)
Frame = +1
Query: 178 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEXKFIVKA 357
+++ ++ +E +++LK ++ ++ + + L+ VG + + + E IV +
Sbjct: 69 ERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSS 128
Query: 358 TNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYS 537
+ GP Y VG +DK++L+ G + + L+++ L EVDP+V M E +Y+
Sbjct: 129 SVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYA 188
Query: 538 AIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
IG L+ QI ++ E +ELPL +PEL+ +GI PPKG +L
Sbjct: 189 DIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVIL 227
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 91.9 bits (218), Expect = 3e-19
Identities = 48/159 (30%), Positives = 89/159 (55%)
Frame = +1
Query: 178 KKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEXKFIVKA 357
+++ ++ +E +++LK ++ ++ + + L+ VG + + + E IV +
Sbjct: 69 ERIKDYLLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSS 128
Query: 358 TNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYS 537
+ GP Y VG +DK++L+ G + + L+++ L EVDP+V M E +Y+
Sbjct: 129 SVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYA 188
Query: 538 AIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
IG L+ QI ++ E +ELPL +PEL+ +GI PPKG +L
Sbjct: 189 DIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVIL 227
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 89.8 bits (213), Expect = 1e-18
Identities = 44/106 (41%), Positives = 64/106 (60%)
Frame = +1
Query: 334 EXKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHE 513
+ K++V +YVVG + ++ G RV +D I LP ++DP V M+ E
Sbjct: 138 DAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVE 197
Query: 514 DPGDVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCL 651
+ D TYS IG +EQI ++ EV+ELP+++PE FVR+GI PPKG L
Sbjct: 198 EKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVL 243
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 89.4 bits (212), Expect = 2e-18
Identities = 52/179 (29%), Positives = 97/179 (54%)
Frame = +1
Query: 118 MPASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQSV 297
M ST+D E L + R+ +E +++ +D+ K+L ++ +++ ++K +QSV
Sbjct: 20 MDLSTADEEDLYGRLKSLERQ--LEFTDIQEEYV--KDEQKNLKRELLRAQEEVKRIQSV 75
Query: 298 GQIVGEVLKQLTEXKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPR 477
++G+ ++ + + IV +T G Y V +++ LK VAL + ++ LP
Sbjct: 76 PLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPP 135
Query: 478 EVDPLVYNMSHEDPGDVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
E D + +S + DV+Y+ IG Q ++ E +ELPL + EL+ ++GI PP+G LL
Sbjct: 136 EADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLL 194
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 87.8 bits (208), Expect = 6e-18
Identities = 40/106 (37%), Positives = 66/106 (62%)
Frame = +1
Query: 334 EXKFIVKATNGPRYVVGCRRQLDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHE 513
+ K+++ ++VVG ++ ++ G RV +D I LP ++DP V M+ E
Sbjct: 101 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVE 160
Query: 514 DPGDVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCL 651
+ DVTY+ +G +EQI ++ EV+ELP+++PE FV++GI PPKG L
Sbjct: 161 EKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVL 206
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 61.3 bits (142), Expect = 5e-10
Identities = 32/86 (37%), Positives = 49/86 (56%)
Frame = +1
Query: 397 LDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGXLQEQITQLX 576
+D + LK G V ++ + I+ LP E D V M ++ Y+ IG L++QI +L
Sbjct: 125 VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 184
Query: 577 EVIELPLMNPELFVRVGITPPKGCLL 654
E I LP+ + E F ++G+ PPKG LL
Sbjct: 185 EAIVLPMTHKERFEKLGVRPPKGVLL 210
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 61.3 bits (142), Expect = 5e-10
Identities = 33/86 (38%), Positives = 49/86 (56%)
Frame = +1
Query: 397 LDKNKLKGGTRVALDMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGXLQEQITQLX 576
+D + LK G V ++ + I+ LP E D V M ++ Y+ IG L++QI +L
Sbjct: 124 VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELV 183
Query: 577 EVIELPLMNPELFVRVGITPPKGCLL 654
E I LP+ + E F ++GI PPKG LL
Sbjct: 184 EAIVLPMTHKEQFEKLGIRPPKGVLL 209
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 54.0 bits (124), Expect = 8e-08
Identities = 21/44 (47%), Positives = 33/44 (75%)
Frame = +1
Query: 523 DVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
DV Y +G +++Q+ Q+ E++ELPL +P+LF +G+ PPKG LL
Sbjct: 203 DVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 246
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 52.4 bits (120), Expect = 3e-07
Identities = 20/44 (45%), Positives = 33/44 (75%)
Frame = +1
Query: 523 DVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
+V Y +G +++Q+ Q+ E++ELPL +P+LF +G+ PPKG LL
Sbjct: 203 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 246
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 52.4 bits (120), Expect = 3e-07
Identities = 20/44 (45%), Positives = 33/44 (75%)
Frame = +1
Query: 523 DVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
+V Y +G +++Q+ Q+ E++ELPL +P+LF +G+ PPKG LL
Sbjct: 204 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILL 247
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = +1
Query: 523 DVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
D+ + IG L E I L E++ PL+ PE F ITPP+G LL
Sbjct: 377 DINFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLL 420
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +1
Query: 526 VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
+T++ + + E +L E++E L NPE +VR+G PP+G LL
Sbjct: 322 ITFADVAGVDEAKEELEEIVEF-LRNPEKYVRLGARPPRGVLL 363
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +1
Query: 514 DPGDVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
D +T++ + + E +L E++E L NP+ +VR+G PP+G LL
Sbjct: 322 DGETITFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPPRGVLL 367
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 523 DVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPP-KGCLL 654
DVT+ IG L++ L E++ LPL PELF + +T P KG LL
Sbjct: 816 DVTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILL 860
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 38.7 bits (86), Expect = 0.003
Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = +1
Query: 556 EQITQ-LXEVIELPLMNPELFVRVGITPPKGCLL 654
E +TQ + EV+ +PL+ PE F +G+TPP+G LL
Sbjct: 725 EGVTQCMKEVVLIPLLYPEFFDNLGLTPPRGILL 758
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/43 (37%), Positives = 28/43 (65%)
Frame = +1
Query: 526 VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
V ++ + + E + +L E+++ L NP+LF ++GI PP G LL
Sbjct: 427 VKFADVAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLL 468
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/43 (34%), Positives = 28/43 (65%)
Frame = +1
Query: 526 VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
VT+ +G L++ +L + +E P+ + FV++GI+P +G LL
Sbjct: 283 VTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILL 325
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 35.9 bits (79), Expect = 0.024
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +1
Query: 529 TYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCL 651
T+ G +++ + +L + P++NPE F ++G+ PP G L
Sbjct: 231 TFKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGIL 271
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 35.9 bits (79), Expect = 0.024
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 526 VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGIT-PPKGCLL 654
V++S IG L+ L E++ LPL PELF + +T P KG LL
Sbjct: 947 VSFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILL 990
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 34.7 bits (76), Expect = 0.054
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 526 VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
VT++ IG L E L E++ LPL P+LF + P +G LL
Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPDLFKGGLLKPCRGILL 453
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 34.7 bits (76), Expect = 0.054
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1
Query: 523 DVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
+VT+ IG L E L E++ LPL P+LF + P +G LL
Sbjct: 517 NVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILL 560
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 34.7 bits (76), Expect = 0.054
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +1
Query: 523 DVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
+VT+ IG L E L E++ LPL P+LF + P +G LL
Sbjct: 512 NVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILL 555
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 34.3 bits (75), Expect = 0.072
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 484 DPLVYNMSHEDPGDVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGIT-PPKGCLL 654
D + ++ + D DV + +IG L+ L E++ LPL PELF + P KG LL
Sbjct: 67 DVIACDVINPDHIDVEFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQKGVLL 124
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 34.3 bits (75), Expect = 0.072
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 526 VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGIT-PPKGCLL 654
V++ IG L+ L E++ LPL PELF + +T P KG LL
Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILL 1003
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 34.3 bits (75), Expect = 0.072
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 526 VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
V + +G E QL E +E P + + F R+G PP G L+
Sbjct: 721 VNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPPSGILM 763
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 33.9 bits (74), Expect = 0.095
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +1
Query: 517 PGD--VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPP-KGCLL 654
PG+ V + IG L++ L E++ LP+ PELF R + P KG LL
Sbjct: 343 PGEIGVKFEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILL 391
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +1
Query: 523 DVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGIT-PPKGCLL 654
DV + +IG L+ L E++ LPL PELF + P KG LL
Sbjct: 83 DVEFGSIGGLESIKQALYELVILPLKRPELFAYGKLLGPQKGVLL 127
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 517 PGD--VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPP-KGCLL 654
PG+ V + IG L+ L E++ LP+ PELF R + P KG LL
Sbjct: 142 PGEIGVKFDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILL 190
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 526 VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
VT+ + + +L EV++ L NP+ + +G PKGCLL
Sbjct: 247 VTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLL 288
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 31.5 bits (68), Expect = 0.51
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +1
Query: 526 VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPP-KGCLL 654
VT+ IG L+ L E++ LP PELF + +T P G LL
Sbjct: 732 VTFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILL 775
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 526 VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
V+++ + + +L EV++ L NP+ + +G PKGCLL
Sbjct: 259 VSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIPKGCLL 300
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 30.7 bits (66), Expect = 0.88
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 235 LKDLTKQYDKSENDLKALQSVGQIVGEVLKQLT 333
L D KQY + D+K+++ +G+ GE K +T
Sbjct: 74 LDDFRKQYQEENPDVKSMREIGKTCGEKWKTMT 106
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 526 VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
VT+ + + E EV+E L PE F VG PKG LL
Sbjct: 224 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIPKGVLL 265
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 30.7 bits (66), Expect = 0.88
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +1
Query: 526 VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
VT+ + + E EV+E L PE F VG PKG LL
Sbjct: 217 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIPKGVLL 258
>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 673
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/51 (25%), Positives = 30/51 (58%)
Frame = +1
Query: 196 KEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEXKFI 348
+E+++RLK+ + L + T D + + L+++GQ++ + QL + K +
Sbjct: 245 QELQARLKDSQRVLGEATSDADLPRSAHEKLRAMGQVLAKAKMQLYDCKLV 295
>At2g33793.1 68415.m04145 expressed protein
Length = 212
Score = 29.9 bits (64), Expect = 1.5
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 133 SDMEPLREKAFQDYRKKLMEH-KEVESRLKEGRDQLKDLTKQYDKSENDLKALQSVGQIV 309
S ++ REKA +D RKK E V + +K D+LK +K + +N KAL +
Sbjct: 45 SALQQFREKAHEDGRKKKEESISSVSTEVKSKIDELK--SKLEKERQNFSKALSKSSKEC 102
Query: 310 GEVLK 324
+LK
Sbjct: 103 ENILK 107
>At1g51940.1 68414.m05855 protein kinase family protein /
peptidoglycan-binding LysM domain-containing protein
contains protein kinases ATP-binding region signature,
PROSITE:PS00107
Length = 651
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = -3
Query: 275 SFSLLSYCLVKSFSWSRPSLSRDSTSLCS--MSFFL*SWKAFSLNGSMSDVL 126
+F + L+ SFS S+P D+T LCS ++F ++FS+ SM DVL
Sbjct: 4 TFYIFFLSLLPSFSSSKPMNCSDTTRLCSSFLAFKPNQNQSFSVIQSMFDVL 55
>At3g19670.1 68416.m02492 FF domain-containing protein / WW
domain-containing protein weak similarity to
huntingtin-interacting protein HYPA/FBP11 [Homo sapiens]
GI:3341980; contains Pfam profiles PF01846: FF domain,
PF00397: WW domain
Length = 960
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +1
Query: 127 STSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSEN 273
ST E R++ F+DY L KE +R+K+ + +D+ +++DK +
Sbjct: 797 STIGDESFRKRCFEDYVSLL---KEQSNRIKQNKKVPEDVREEHDKGRD 842
>At3g49840.1 68416.m05449 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 606
Score = 29.1 bits (62), Expect = 2.7
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = +1
Query: 106 KLFTMPASTSDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQ-LKDLTKQYDK--SEND 276
KL T+P S SD+ P + R+KL + +E++ KE + LK+L ++ S ++
Sbjct: 383 KLRTVPLSESDIFPSSFHKTPEGRRKLTK-EELQKFTKESTENALKELVSSPEEGSSGSE 441
Query: 277 LKALQSVGQIVGEVLKQ 327
+A + + VGE K+
Sbjct: 442 KQAARGTSEPVGECTKK 458
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 529 TYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
T+ + + +L EV+E L NP F R+G PKG LL
Sbjct: 360 TFKDVKGCDDAKQELEEVVEY-LKNPSKFTRLGGKLPKGILL 400
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 523 DVTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
+V + +G L++ T + + ++LPL++ +LF G+ G LL
Sbjct: 654 NVKWDDVGGLEDVKTSILDTVQLPLLHKDLF-SSGLRKRSGVLL 696
>At5g60070.1 68418.m07532 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 548
Score = 27.9 bits (59), Expect = 6.2
Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Frame = +1
Query: 196 KEVESRLKEGRDQLKD-LTKQYDKSENDLKALQSVG--QIVGEVLKQLTEXKFIVKATNG 366
KE+ S E D+L+D L KQ E L G +V E++K KA NG
Sbjct: 49 KEILSNHMESEDELRDLLRKQNQCGETALYVAAEYGDADVVAELIKYYDLEDAETKARNG 108
Query: 367 --PRYVVGCRRQLDKNKLKGGTRVALDMT 447
P ++ + +LD ++ L MT
Sbjct: 109 FDPFHIAAKQGELDVLRVLMEEHPELSMT 137
>At5g48660.1 68418.m06022 expressed protein ; expression supported
by MPSS
Length = 219
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/53 (22%), Positives = 30/53 (56%)
Frame = +1
Query: 133 SDMEPLREKAFQDYRKKLMEHKEVESRLKEGRDQLKDLTKQYDKSENDLKALQ 291
++++ EKA ++ ++ ++ + RLK+ + K+ K+ + +E + ALQ
Sbjct: 137 TELKEKEEKASKEIKQLQVKLSSITERLKKAETESKEKEKKLETAETHVTALQ 189
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 526 VTYSAIGXLQEQITQLXEVIELPLMNPELFVRVGITPPKGCLL 654
+T+ + + E E++E L PE F +G PKG LL
Sbjct: 220 ITFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIPKGVLL 261
>At5g11260.1 68418.m01315 bZIP protein HY5 (HY5) identical to HY5
protein GI:2251085 from [Arabidopsis thaliana]
Length = 168
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 214 LKEGRDQLKDLTKQYDKSENDLKALQSVGQIVGEVLKQLTEXK 342
L E +++KDL + + E L LQ+ Q++ +LK T K
Sbjct: 113 LSELENRVKDLENKNSELEERLSTLQNENQMLRHILKNTTGNK 155
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +1
Query: 199 EVESRLKEGRDQLKDLTKQYDKSENDLKALQSV 297
++++R+ E DQL DLT + ++E D + Q+V
Sbjct: 478 KLKTRIAELEDQLSDLTAERYENERDSRLTQAV 510
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 27.5 bits (58), Expect = 8.2
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 439 DMTTLTIMRHLPREVDPLVYNMSHEDPGDVTYSAIGXLQEQITQLXEVI 585
D TL +P +V+ L + DP VT +G E ITQ+ VI
Sbjct: 406 DRQTLLFSATMPWKVEKLAREIL-SDPIRVTVGEVGMANEDITQVVNVI 453
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,929,727
Number of Sequences: 28952
Number of extensions: 238293
Number of successful extensions: 723
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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