Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H18
         (488 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    24   0.85 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   3.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   4.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   7.9  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 23.8 bits (49), Expect = 0.85
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -1

Query: 257 MYHTTFQRHTTSTKXYYVFVSS*TSPKTRRIAKQCSRHFT 138
           +YH    R    T      V+    PK + I K C+R FT
Sbjct: 51  LYHKLQFRGPPRTPLQPKLVAGKLKPKRQFICKYCNRQFT 90


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +1

Query: 40  FNYICRHSIQTISN 81
           F+++CRH+++   N
Sbjct: 144 FDFLCRHTVEYFQN 157


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 11/57 (19%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 462 EEALLRKQLELEYINSACGAFIHTRKFTIIR-KYKQVIXNLPRSSVFPTKVHERIFC 295
           ++ ++++Q++  + +S    F  +  F ++  KY++    L ++  F T V   ++C
Sbjct: 361 KQYVMQQQVK-NFRHSVRSVFFLSEIFGLVNLKYRETYFRLSKTKTFCTLVTALVYC 416


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 307 ENLLPW*TYKSPFLLXGC 254
           ++LLP  T  SP+L  GC
Sbjct: 256 QSLLPSQTGLSPYLRFGC 273


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,036
Number of Sequences: 336
Number of extensions: 2086
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)