Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H18
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    65   6e-12
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    51   8e-08
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   8.1  

>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 64.9 bits (151), Expect = 6e-12
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
 Frame = +1

Query: 271 RGSCMFTKAEDSLMHFCWKDRT--TGEVXDDLLIFPDDCEFTRVNECTTGRVYVXXXXXX 444
           +G      A D L+HF WK+R   + EV DD +IFP++ EF +++ECTTGRVY       
Sbjct: 43  KGVIYMQMASDELLHFYWKERARVSREVEDDYIIFPEEAEFIKIDECTTGRVYALKFKSS 102

Query: 445 XXXXXXWMXE 474
                 WM E
Sbjct: 103 SQIHFYWMQE 112


>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 51.2 bits (117), Expect = 8e-08
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +1

Query: 271 RGSCMFTKAEDSLMHFCWKDRTTGE-VXDDLLIFPDDCEFTRVNECTTGRVYVXXXXXXX 447
           +G  +  +    L+HF W  R   E   DD+++F  +C F +V ECTTGR Y+       
Sbjct: 26  KGYIVMNRDAYGLIHFQWAKRNDLENPEDDIIVFSSECTFEKVTECTTGRAYMLKYPSSA 85

Query: 448 XXXXXWMXEPKAD 486
                WM E   D
Sbjct: 86  HSLFYWMQEASDD 98


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 230  YDVERSYGTSXQKEGALVCLPRQKILSCTFVGKTELRGRL 349
            Y++   YG     E   + LP  K + C F  K  L  R+
Sbjct: 1758 YNLSIQYGNLNSSEMQSLSLPSGKCVPCRFESKEVLTSRM 1797


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,834,036
Number of Sequences: 5004
Number of extensions: 34242
Number of successful extensions: 77
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)