Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_H18
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0341 - 29398221-29398345,29398757-29398811,29398904-293989... 36 0.023
12_02_0627 + 21354165-21354288,21355770-21356248,21356752-21356778 30 0.87
09_02_0076 - 3959572-3960279 29 2.0
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582... 29 2.6
06_03_0319 + 19537529-19538056 28 4.6
01_01_0996 - 7879154-7880117,7881280-7881395 28 4.6
10_05_0048 + 8529413-8530168,8546996-8547220 27 8.1
07_03_0166 + 14637891-14638469 27 8.1
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330... 27 8.1
>05_07_0341 -
29398221-29398345,29398757-29398811,29398904-29398981,
29399063-29399154,29399237-29399260,29399353-29399471,
29399839-29399908,29399985-29400051,29400145-29400219,
29400313-29400351,29400735-29400827,29401611-29401634
Length = 286
Score = 35.5 bits (78), Expect = 0.023
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 355 DLLIFPDDCEFTRVNECTTGRVYVXXXXXXXXXXXXWMXEPKAD 486
D ++FP++ F +V + ++GRVY+ WM EP AD
Sbjct: 40 DQIVFPEEAVFEKVTQ-SSGRVYILKFRHDSRKFFFWMQEPSAD 82
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 216 FRAGRMTLKGRMVHPXKRKGLLYV 287
FRAG+M+L G V P RKGL+ +
Sbjct: 14 FRAGKMSLDGTRVIPDTRKGLVRI 37
>12_02_0627 + 21354165-21354288,21355770-21356248,21356752-21356778
Length = 209
Score = 30.3 bits (65), Expect = 0.87
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 219 RAGRMTLKGRMVHPXKRKGLLYVYQGRRFSHALLLERP 332
RAG +GR++ ++ + + QGRR SHA+LL P
Sbjct: 15 RAGPRCAEGRLLRCARQVAITALGQGRRPSHAILLMDP 52
>09_02_0076 - 3959572-3960279
Length = 235
Score = 29.1 bits (62), Expect = 2.0
Identities = 17/44 (38%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Frame = -3
Query: 459 EALLRKQLELEYINSACGAFIHTRKFTIIRKYK-QVIXNLPRSS 331
EA+L++ + +++NS F+ TRK T+++KYK +V+ + PR+S
Sbjct: 49 EAMLQQARD-QFLNS----FMQTRKGTLVQKYKIKVVVDDPRTS 87
>04_03_0052 +
10257109-10257337,10257580-10257668,10257708-10258289,
10258477-10258668,10259392-10259563,10260190-10260461,
10260682-10260801,10260912-10260968,10261631-10261831,
10262451-10262511,10262712-10263013
Length = 758
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = -3
Query: 453 LLRKQLELEYINSACGAFIHTRKFTIIRKYK-QVIXNLP 340
L+R+Q + + +NS F+ TRK T+++KYK +++ ++P
Sbjct: 671 LMRQQTQHQLLNS----FMETRKGTVVQKYKVKLVADVP 705
>06_03_0319 + 19537529-19538056
Length = 175
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = -3
Query: 450 LRKQLELEYINSACGAFIHTRKFTIIRKYK-QVIXNLPRSS 331
+ +Q +++NS F+ TRK T+++KYK +V+ + PR+S
Sbjct: 53 MMQQARDQFLNS----FMQTRKGTLVQKYKVKVVADDPRTS 89
>01_01_0996 - 7879154-7880117,7881280-7881395
Length = 359
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 263 VWMYHTTFQRHTTSTKXYYVFVSS*TSPKTRRIAKQC 153
+W +H T R+ ++ + SS T P RRIA C
Sbjct: 15 LWEFHATGPRNISNPSWRDLIRSSWTDPNYRRIAVSC 51
>10_05_0048 + 8529413-8530168,8546996-8547220
Length = 326
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -3
Query: 420 NSACGAFIHTRKFTIIRKYK-QVIXNLP 340
N +F+ TRK T+++KYK +V+ ++P
Sbjct: 59 NQFLSSFMQTRKGTVVQKYKVKVVADVP 86
>07_03_0166 + 14637891-14638469
Length = 192
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/44 (38%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = -3
Query: 459 EALLRKQLELEYINSACGAFIHTRKFTIIRKYK-QVIXNLPRSS 331
EA+L+ Q + +++NS F+ TRK T+++KYK +V+ + P +S
Sbjct: 51 EAMLQ-QAQDQFLNS----FMQTRKGTLVQKYKVKVVADDPGTS 89
>04_03_0068 -
10631827-10631947,10632037-10632112,10632152-10633021,
10650975-10651599
Length = 563
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/44 (38%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = -3
Query: 459 EALLRKQLELEYINSACGAFIHTRKFTIIRKYK-QVIXNLPRSS 331
EA+L+ Q + +++NS F+ TRK T+++KYK +V+ + P +S
Sbjct: 49 EAMLQ-QAQDQFLNS----FMQTRKGTLVQKYKIKVVADDPGTS 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,577,569
Number of Sequences: 37544
Number of extensions: 212765
Number of successful extensions: 430
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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