Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H18
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16872| Best HMM Match : ARM_1 (HMM E-Value=0)                       99   2e-21
SB_48476| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_36624| Best HMM Match : Glyco_hydro_20 (HMM E-Value=1.1e-13)        27   8.3  
SB_31422| Best HMM Match : RVT_1 (HMM E-Value=1)                       27   8.3  
SB_6517| Best HMM Match : RVT_1 (HMM E-Value=2.3)                      27   8.3  
SB_1419| Best HMM Match : CSE2 (HMM E-Value=6.1)                       27   8.3  
SB_18334| Best HMM Match : CSE2 (HMM E-Value=4.9)                      27   8.3  
SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  

>SB_16872| Best HMM Match : ARM_1 (HMM E-Value=0)
          Length = 401

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 41/74 (55%), Positives = 50/74 (67%)
 Frame = +1

Query: 265 KGRGSCMFTKAEDSLMHFCWKDRTTGEVXDDLLIFPDDCEFTRVNECTTGRVYVXXXXXX 444
           K +G     ++EDSLMHFCWKDRT+G+V DDL+IFPDD E+ RV +CTTGRVY+      
Sbjct: 36  KRKGQVYIHQSEDSLMHFCWKDRTSGKVEDDLIIFPDDIEYKRVKQCTTGRVYILKFKSS 95

Query: 445 XXXXXXWMXEPKAD 486
                 WM EPK D
Sbjct: 96  SRKFFFWMQEPKTD 109



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 21/50 (42%), Positives = 31/50 (62%)
 Frame = +3

Query: 144 MSTALFGNTXXXXXXXXXNKHIVXFRAGRMTLKGRMVHPXKRKGLLYVYQ 293
           M+ +LFG T         +K+++ FRAG+M LKG  V   KRKG +Y++Q
Sbjct: 1   MAASLFGPTARSS-----SKNLLEFRAGKMNLKGTTVTADKRKGQVYIHQ 45


>SB_48476| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +2

Query: 173 WSWGKFXRKQTHSXISCWSYDVERSYGTSXQKEGALVCLPRQKILSCTFVGKTELRG 343
           W W +     T      W++ +E S   S  K   +  LP+  +      GKTE RG
Sbjct: 142 WIWKEHAEIFTSIICKIWNWSLESSVWPSSWKRAHVTPLPKVDVPK----GKTEYRG 194


>SB_36624| Best HMM Match : Glyco_hydro_20 (HMM E-Value=1.1e-13)
          Length = 362

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +2

Query: 143 NVYCTVWQYVWSWGKFXR 196
           NVY   W  VW WG   R
Sbjct: 144 NVYAYAWDNVWEWGHGSR 161


>SB_31422| Best HMM Match : RVT_1 (HMM E-Value=1)
          Length = 374

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +2

Query: 173 WSWGKFXRKQTHSXISCWSYDVERSYGTSXQKEGALVCLPRQKILSCTFVGKTELRG 343
           W W +     T      W++ +E S   S  K   +  LP+  +      GKTE RG
Sbjct: 145 WIWKEHAEIFTSIICKIWNWSLESSVWPSSWKRAHVTPLPKVDVPK----GKTEYRG 197


>SB_6517| Best HMM Match : RVT_1 (HMM E-Value=2.3)
          Length = 275

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +2

Query: 173 WSWGKFXRKQTHSXISCWSYDVERSYGTSXQKEGALVCLPRQKILSCTFVGKTELRG 343
           W W +     T      W++ +E S   S  K   +  LP+  +      GKTE RG
Sbjct: 46  WIWKEHAEIFTSIICKIWNWSLESSVWPSSWKRAHVTPLPKVDVPK----GKTEYRG 98


>SB_1419| Best HMM Match : CSE2 (HMM E-Value=6.1)
          Length = 270

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +2

Query: 173 WSWGKFXRKQTHSXISCWSYDVERSYGTSXQKEGALVCLPRQKILSCTFVGKTELRG 343
           W W +     T      W++ +E S   S  K   +  LP+  +      GKTE RG
Sbjct: 133 WIWKEHAEIFTSIICKIWNWSLESSVWPSSWKRAHVTPLPKVDVPK----GKTEYRG 185


>SB_18334| Best HMM Match : CSE2 (HMM E-Value=4.9)
          Length = 296

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +2

Query: 173 WSWGKFXRKQTHSXISCWSYDVERSYGTSXQKEGALVCLPRQKILSCTFVGKTELRG 343
           W W +     T      W++ +E S   S  K   +  LP+  +      GKTE RG
Sbjct: 159 WIWKEHAEIFTSIICKIWNWSLESSVWPSSWKRAHVTPLPKVDVPK----GKTEYRG 211


>SB_18016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +2

Query: 173 WSWGKFXRKQTHSXISCWSYDVERSYGTSXQKEGALVCLPRQKILSCTFVGKTELRG 343
           W W +     T      W++ +E S   S  K   +  LP+  +      GKTE RG
Sbjct: 193 WIWKEHAEIFTSIICKIWNWSLESSVWPSSWKRAHVTPLPKVDVPK----GKTEYRG 245


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,997,880
Number of Sequences: 59808
Number of extensions: 270388
Number of successful extensions: 642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)