Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H18
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23177-4|AAM22055.1|  374|Caenorhabditis elegans Hypothetical pr...    69   2e-12
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U97011-1|AAB52324.1|  174|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    27   9.7  

>U23177-4|AAM22055.1|  374|Caenorhabditis elegans Hypothetical
           protein C56G2.7 protein.
          Length = 374

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 28/52 (53%), Positives = 35/52 (67%)
 Frame = +1

Query: 271 RGSCMFTKAEDSLMHFCWKDRTTGEVXDDLLIFPDDCEFTRVNECTTGRVYV 426
           +G     ++ D L+HFCWKDR TG V DDL+IFPDD EF  V  C  G+VY+
Sbjct: 45  KGLVFIKQSNDMLIHFCWKDRETGAVVDDLIIFPDDAEFKAVPGCPDGKVYM 96


>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -3

Query: 441  QLELEYINSACGAFIHTRKFTIIRKYKQVIXNLPRSSVFPTKVHERIFCLGKHTRA 274
            +LE E I+      I+T K  + R  K+V     +SSV P + HE I    KH  A
Sbjct: 1677 ELEAEGISFPANLNIYTDKDGLKRIRKRV-----KSSVLPAEAHEPIVIHNKHVLA 1727


>U97011-1|AAB52324.1|  174|Caenorhabditis elegans Hypothetical
           protein F31F7.3 protein.
          Length = 174

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 307 ENLLPW*TYKSPFLLXGCTIRPFNVIRPARNXT 209
           EN+ P   Y  P LL    + P N IRPA + T
Sbjct: 6   ENICPRNIYHFPLLLIVFFLLPDNFIRPANHFT 38


>U00065-1|AAK68287.1|  400|Caenorhabditis elegans Hypothetical
           protein D1044.7 protein.
          Length = 400

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 4   RSGVILHFVLAYFNYICRHSIQT 72
           R G I H+   Y NY+C HS  T
Sbjct: 52  RYGAICHYSSNYNNYLCCHSQNT 74


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = -3

Query: 441  QLELEYINSACGAFIHTRKFTIIRKYKQVIXNLPRSSVFPTKVHERIFCLGKHTRA 274
            +LE E I+      I+T K  + R  K+V     +SSV P + HE I    KH  A
Sbjct: 1677 ELEAEGISFPANLNIYTDKDGLKRIRKRV-----KSSVLPAEAHEPIVIHNKHVLA 1727


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,288,783
Number of Sequences: 27780
Number of extensions: 197050
Number of successful extensions: 401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)