Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H18
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.3  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 188 TSPKTRRIAKQCSRHFTMICSVTVNP 111
           TSP T   +     H    CSVT +P
Sbjct: 330 TSPMTSTKSTIVRNHLNSTCSVTNSP 355


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 307 ENLLPW*TYKSPFLLXGC 254
           ++LLP  T  SP+L  GC
Sbjct: 260 QSLLPSQTGLSPYLRFGC 277


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -2

Query: 349 QPPP*FGLSNKS 314
           QPPP FG+S  S
Sbjct: 379 QPPPNFGVSQVS 390


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 216 FRAGRMTLKGRMVHPXKRKGLLYV 287
           + A  + +KG+MVH  +   +L+V
Sbjct: 369 YPAEGLEMKGQMVHCPESDSILFV 392


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,780
Number of Sequences: 438
Number of extensions: 2660
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)