Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H18
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26590.1 68415.m03190 adhesion regulating molecule family sim...    57   7e-09
At4g20190.1 68417.m02952 hypothetical protein                          31   0.32 
At3g17750.1 68416.m02265 protein kinase family protein contains ...    30   0.96 
At3g46730.1 68416.m05073 disease resistance protein (CC-NBS clas...    29   2.2  
At1g17850.1 68414.m02209 expressed protein                             27   5.1  
At5g04060.1 68418.m00387 dehydration-responsive protein-related ...    27   6.8  
At2g36190.1 68415.m04442 beta-fructosidase, putative / beta-fruc...    27   6.8  
At2g17600.1 68415.m02036 DC1 domain-containing protein contains ...    27   6.8  
At3g46710.1 68416.m05071 disease resistance protein (CC-NBS-LRR ...    27   9.0  
At3g46530.1 68416.m05051 disease resistance protein, RPP13-like ...    27   9.0  
At1g55240.1 68414.m06309 expressed protein contains Pfam profile...    27   9.0  

>At2g26590.1 68415.m03190 adhesion regulating molecule family
           similar to oocyte membrane protein (GI:6174842) [Xenopus
           laevis]; similar to Adhesion regulating molecule 1
           precursor (110 kDa cell membrane glycoprotein) (Gp110)
           (Swiss-Prot:Q16186) [Homo sapiens]; contains Pfam
           PF04683: Adhesion regulating molecule conserved region
          Length = 300

 Score = 56.8 bits (131), Expect = 7e-09
 Identities = 24/72 (33%), Positives = 39/72 (54%)
 Frame = +1

Query: 271 RGSCMFTKAEDSLMHFCWKDRTTGEVXDDLLIFPDDCEFTRVNECTTGRVYVXXXXXXXX 450
           +G     + ++ L+HF W DR    V DD ++FPD+  F +VN+ ++ RVY+        
Sbjct: 35  KGLVRIARGDEGLIHFQWLDRNQNTVEDDQIVFPDEALFEKVNQ-SSDRVYILKFNSDDR 93

Query: 451 XXXXWMXEPKAD 486
               WM EP+A+
Sbjct: 94  KLFFWMQEPRAE 105



 Score = 33.1 bits (72), Expect = 0.10
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +3

Query: 207 IVXFRAGRMTLKGRMVHPXKRKGLLYVYQG 296
           ++ FRAG+M+L+G  V P  RKGL+ + +G
Sbjct: 14  MLEFRAGKMSLQGTRVVPDARKGLVRIARG 43


>At4g20190.1 68417.m02952 hypothetical protein 
          Length = 389

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 289 TKAEDSLMHFCWKDRTTGEVXDDLLIFPDDCEFTRVNECTTGR 417
           T   +S +H  WKDRTT +V D +L+      F R   C  GR
Sbjct: 94  TSPRNSSIHN-WKDRTTEQVLDLMLVQDAATAFRRSKSCGEGR 135


>At3g17750.1 68416.m02265 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 1138

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 292 KAEDSLMHFCWKDRTTGEVXDDLLIFPDD 378
           K+ED LM+F W+++   ++ D+ LI  D+
Sbjct: 338 KSEDKLMNFTWEEKHERDILDEKLINTDN 366


>At3g46730.1 68416.m05073 disease resistance protein (CC-NBS class),
           putative domain signature CC-NBS exists, suggestive of a
           disease resistance protein.
          Length = 847

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 312 HERIFCLGKHTRAPSFCXDVPYDLSTSYDQHEIXLCVCFLXNFPQD 175
           HE    L +  +  S      +DLS    +HE+ LC  +   FP+D
Sbjct: 385 HEVCASLWRRLKDNSIHISTVFDLSFKEMRHELKLCFLYFSVFPED 430


>At1g17850.1 68414.m02209 expressed protein
          Length = 423

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 146 VYCTVWQYVWSWGKFXRKQTHSXISCWSYDVERSYGTSXQKE 271
           ++C +W Y W  G F R      + C+      S+G S +KE
Sbjct: 194 IWCEIWCYEWDVGHF-RGAHRPEVDCFR---NTSFGLSDEKE 231


>At5g04060.1 68418.m00387 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 600

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 483 SLWLXHPEEALLRKQLELEYINSACG 406
           ++W+   +EA LRK  ELE I + CG
Sbjct: 351 AIWVKEDDEACLRKNAELELI-TICG 375


>At2g36190.1 68415.m04442 beta-fructosidase, putative /
           beta-fructofuranosidase, putative similar to
           beta-fructofuranosidase GI:18324 from [Daucus carota]
          Length = 591

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 264 KRKGLLYVYQGRRFSHALLLERP 332
           KR+G+ Y+Y+ R F H +  + P
Sbjct: 209 KRRGIAYIYRSRDFKHWVKAKHP 231


>At2g17600.1 68415.m02036 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 580

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 264 CXDVPYDLSTSYDQHEIXLC 205
           C  +PY+L   YD H + LC
Sbjct: 449 CATIPYELYYKYDAHLLSLC 468


>At3g46710.1 68416.m05071 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 847

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 249 YDLSTSYDQHEIXLCVCFLXNFPQD 175
           +DLS     HE+ LC  +L  FP+D
Sbjct: 399 FDLSFKDMGHELKLCFLYLSVFPED 423


>At3g46530.1 68416.m05051 disease resistance protein, RPP13-like
           (CC-NBS class), putative domain signature CC-NBS exists,
           suggestive of a disease resistance protein. Closest
           homolog in Col-0 to RPP13.
          Length = 835

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 255 VPYDLSTSYDQHEIXLCVCFLXNFPQD 175
           + +DLS    +HE  LC  +L  FP+D
Sbjct: 404 IVFDLSFKELRHESKLCFLYLSIFPED 430


>At1g55240.1 68414.m06309 expressed protein contains Pfam profile
           PF04819: Family of unknown function (DUF716) (Plant
           viral-response family)
          Length = 311

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 38  TSTIFVVTLFKLFQTVYCKGLKY 106
           T+T+FVVTL+ +   VY + ++Y
Sbjct: 248 TNTLFVVTLYLILDRVYGENVEY 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,452,977
Number of Sequences: 28952
Number of extensions: 175241
Number of successful extensions: 378
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)