Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H15
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    52   7e-08
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    44   3e-05
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    42   6e-05
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    42   1e-04
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    41   1e-04
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    29   0.77 
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.4  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    27   2.4  
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    25   7.2  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.5  
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    25   9.5  

>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 19/36 (52%), Positives = 24/36 (66%)
 Frame = +3

Query: 540 EXSICMHCKKTQFTVINRRHHCRKCGSVVCGPCSSK 647
           +  +C+ C+ T FT  NR+HHCR CG V C  CSSK
Sbjct: 172 DSEVCLRCR-TPFTFTNRKHHCRNCGGVFCNQCSSK 206


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 525 WVPXNEXSICMHCKKTQFTVINRRHHCRKCGSVVCGPC 638
           W+     + C  C+ T+FT+  R+HHCR CG ++C  C
Sbjct: 57  WMKDERTNNCSLCE-TEFTLFRRKHHCRICGKIICKYC 93


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +3

Query: 435 KEXWMAHIEKCIXXLLXKSGKQPPSEHAAVWVPXNEXSICMHCKKTQFTVINRRHHCRKC 614
           +E W +     +  LL    K+   +    W   +   IC  C  + FT+  RR HCR C
Sbjct: 243 EELWTSENVSMLDALLLNKAKRL-EQSIVHWQDDSVVQICPECNNS-FTLTRRRRHCRLC 300

Query: 615 GSVVCGPC 638
           G V+C  C
Sbjct: 301 GRVICRFC 308



 Score = 28.7 bits (61), Expect = 0.77
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
 Frame = +3

Query: 525 WVPXNEXSICMH--CKKTQFTVINRRHHCRKCGSVVC 629
           W P     +C    C K     IN   HCRKCG + C
Sbjct: 131 WQPEVPDMVCHDPMCDKL-LNFINGHIHCRKCGYIFC 166


>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +3

Query: 516 AAVWVPXNEXSICMHCKKTQFTVINRRHHCRKCGSVVCGPC 638
           AA+W   +E + C +C    FT   RRHHCR CG + C  C
Sbjct: 21  AAIWQLDDESAQCNNCGGP-FTWFRRRHHCRWCGKLFCYNC 60


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 525 WVPXNEXSICMHCK-KTQFTVINRRHHCRKCGSVVC 629
           W P ++ S+C       +F + +RRHHCR+CG + C
Sbjct: 151 WKPDSDVSVCSFPSCSVRFGLFDRRHHCRRCGDIFC 186


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 537  NEXSICMHCKKTQFTVINRRHHCRKCG-SVVCGPCSS 644
            N   +C  C  ++F+++  R  CR CG S VC  C S
Sbjct: 2551 NTSELCSLCD-SRFSLMEWRSQCRACGNSNVCSDCVS 2586


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 552 CMHCKKTQFTVINRRHHCRKCGSVVCGPCSSK 647
           C  CKK    +  R+  C KC S VC  CS +
Sbjct: 76  CESCKKHTCAICIRQ--CHKCESNVCSMCSKQ 105


>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 366 YRNGWLIRTASKSFAVYAATATE 434
           Y+NG+++  A KS   Y A ATE
Sbjct: 280 YKNGFIVAGADKSIRWYRAAATE 302


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 136 ELLRQLGTTSSRARAGPCLVKVS*QKFAGKNQRHDNSFC 252
           ++L  LG T++    G C+       F+  N   D++FC
Sbjct: 211 QVLAGLGNTNTSMSDGDCIAAFLSSYFSPPNAEFDSTFC 249


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/52 (23%), Positives = 29/52 (55%)
 Frame = -2

Query: 231 LVFSCKFLSRHLHQARTRPCSARGCPELPKQLSTIAILLAFASLFTKRSTII 76
           ++FS   LS  L +ART  C+ +  P+L  + + + + +  + +++ R  ++
Sbjct: 826 ILFSVLELSSLLWKARTEECTDQYVPQLLYKSNKLNLSVILSDIYSCREEVL 877


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 561 CKKTQFTVINRRHHCRKCGSVV 626
           C+K Q    +R HHC +C   +
Sbjct: 99  CEKCQEYKCDRSHHCSQCNKCI 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,054
Number of Sequences: 5004
Number of extensions: 51970
Number of successful extensions: 113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)