Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H14
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)                   30   1.4  
SB_6876| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_41295| Best HMM Match : FTCD (HMM E-Value=5.6)                      28   7.6  
SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                 28   7.6  

>SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)
          Length = 790

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 292 CTDRPMALDFSSRLRTDSSRNTFALHPSNCHRRY 191
           CT  P+AL  SS+L  DS  N F +HP   +++Y
Sbjct: 5   CTFTPIALLLSSKLDFDSPEN-FLIHPGLIYQQY 37


>SB_6876| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 109 GIDNPDITVTYAGVQVD--LISEDDVTKFNIDDDNL 210
           GI N D T  Y  V  D  +I++DD     +DDDN+
Sbjct: 235 GIVNDDDTYVYLAVDDDDNVITDDDFVVIGVDDDNV 270


>SB_57001| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +1

Query: 190  NIDDDNLKDAVRTYFGKSPSGVYLKSPTPWGDLYKKYKFEQVS-RVLSVKSARLKSITKN 366
            N DD N  D + +Y     S  Y  SPT   +LY    F ++S   L     +L   + N
Sbjct: 854  NQDDHNRNDLLASYVTFVFSAPYTLSPTATPELYPGDGFSRISASSLHAPHTKLTMSSSN 913

Query: 367  PAI 375
            P +
Sbjct: 914  PQL 916


>SB_41295| Best HMM Match : FTCD (HMM E-Value=5.6)
          Length = 322

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -2

Query: 626 PVLAPIVIDSVTSSLLPQVDVYEKPVL 546
           P L+ IVI +  +SL  ++D+Y+KPV+
Sbjct: 12  PNLSVIVILNFITSLFSKLDIYDKPVV 38


>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 480 SLSPCC--G*SIFDCVRDTGVHFDRFIGGVLKVLRSDYSRVLGYGF 349
           SL+ CC  G  I + +R   +HFD+ I G+   + S     LG+ +
Sbjct: 41  SLNICCDSGGVILEVLRGIRMHFDKMIKGLTGAMASKAQLGLGHSY 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,093,493
Number of Sequences: 59808
Number of extensions: 356200
Number of successful extensions: 855
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)