Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H14
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g63980.1 68414.m07247 D111/G-patch domain-containing protein ...    30   1.5  
At3g49590.2 68416.m05420 expressed protein                             29   3.5  
At3g49590.1 68416.m05419 expressed protein                             29   3.5  
At5g49780.1 68418.m06165 leucine-rich repeat transmembrane prote...    28   6.2  
At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family...    27   8.2  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    27   8.2  
At1g33260.2 68414.m04112 protein kinase family protein contains ...    27   8.2  
At1g33260.1 68414.m04111 protein kinase family protein contains ...    27   8.2  
At1g16410.2 68414.m01962 cytochrome P450, putative similar to gb...    27   8.2  
At1g16410.1 68414.m01963 cytochrome P450, putative similar to gb...    27   8.2  

>At1g63980.1 68414.m07247 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 391

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 196 DDDNLKDAVRTYFGKSPSGVYLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKSITKN 366
           D   +K  VR    +  SGV L  P PW   +   +F+ + + L V++A  K+ +KN
Sbjct: 37  DKQGIKGYVRVTNKQDTSGVGLDKPNPWA--FDTTQFDNILKKLKVQAAPTKT-SKN 90


>At3g49590.2 68416.m05420 expressed protein 
          Length = 603

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 235 GKSPSGVYLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKSITKNPAIITTQD 390
           G+SPSG+  + PT       KY   + S VLS   +   + +++P+ +++QD
Sbjct: 423 GESPSGLMNQYPTQKLSKDSKYDSGRFSGVLSSSDSPRFAFSRSPSRLSSQD 474


>At3g49590.1 68416.m05419 expressed protein 
          Length = 603

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +1

Query: 235 GKSPSGVYLKSPTPWGDLYKKYKFEQVSRVLSVKSARLKSITKNPAIITTQD 390
           G+SPSG+  + PT       KY   + S VLS   +   + +++P+ +++QD
Sbjct: 423 GESPSGLMNQYPTQKLSKDSKYDSGRFSGVLSSSDSPRFAFSRSPSRLSSQD 474


>At5g49780.1 68418.m06165 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1006

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 179 SLSLISTMTI*RMQCERISGRVRP 250
           SLSL+ T+T+ R+   R+SG + P
Sbjct: 313 SLSLVKTLTVLRLDRNRLSGEIPP 336


>At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family
           protein 
          Length = 426

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 109 GIDNPDITVTYAGVQVDLISEDDVTKFNIDDDNLKD 216
           G+  P   +    VQ+D++ +DD + ++ DD +  D
Sbjct: 389 GLHRPPDVIQVRAVQLDILEDDDSSDYSSDDASSDD 424


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 354 HNQEPGYNHYAGL*ERLQ*NDQSEHRYHAHSRKYFNHNMD 473
           H  +  ++ ++   E    N   EH+ H+H+ +  NHN D
Sbjct: 595 HEHDHHHHSHSHKHEECNHNHDHEHQSHSHNHEECNHNHD 634


>At1g33260.2 68414.m04112 protein kinase family protein contains
           Pfam profile: PF00069: Eukaryotic protein kinase domain
          Length = 348

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 288 QIAPWR----WTFQVDSGRTLPEIRSHCILQIVIVDIKLSDVIFGYQVNLHTC 142
           Q+ PWR      FQV   + +  I   C  QIV  DIK S+++     N   C
Sbjct: 133 QVLPWRNRTAIAFQV--AQAIEHIHEKCSPQIVHGDIKSSNILLDKHFNSKLC 183


>At1g33260.1 68414.m04111 protein kinase family protein contains
           Pfam profile: PF00069: Eukaryotic protein kinase domain
          Length = 349

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 288 QIAPWR----WTFQVDSGRTLPEIRSHCILQIVIVDIKLSDVIFGYQVNLHTC 142
           Q+ PWR      FQV   + +  I   C  QIV  DIK S+++     N   C
Sbjct: 134 QVLPWRNRTAIAFQV--AQAIEHIHEKCSPQIVHGDIKSSNILLDKHFNSKLC 184


>At1g16410.2 68414.m01962 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 423

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +1

Query: 139 YAGVQVDLISEDDVTK--FNIDDDNLKDAVRTYFGKSPSGVYLKSP-TPWGDLYKKYKFE 309
           +AG++   I+ D++ +  F   D +L D  + +  ++    Y     +P+G+ + K K  
Sbjct: 87  FAGIRAITINSDEIAREAFRERDADLADRPQLFIMETIGDNYKSMGISPYGEQFMKMKRV 146

Query: 310 QVSRVLSVKSARL 348
             + ++SVK+ ++
Sbjct: 147 ITTEIMSVKTLKM 159


>At1g16410.1 68414.m01963 cytochrome P450, putative similar to
           gb|AF069494 cytochrome P450 from Sinapis alba and is a
           member of the PF|00067 Cytochrome P450 family
          Length = 538

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = +1

Query: 139 YAGVQVDLISEDDVTK--FNIDDDNLKDAVRTYFGKSPSGVYLKSP-TPWGDLYKKYKFE 309
           +AG++   I+ D++ +  F   D +L D  + +  ++    Y     +P+G+ + K K  
Sbjct: 87  FAGIRAITINSDEIAREAFRERDADLADRPQLFIMETIGDNYKSMGISPYGEQFMKMKRV 146

Query: 310 QVSRVLSVKSARL 348
             + ++SVK+ ++
Sbjct: 147 ITTEIMSVKTLKM 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,225,157
Number of Sequences: 28952
Number of extensions: 230679
Number of successful extensions: 564
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)