Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_H13
(357 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces... 64 5e-12
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 2.6
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 25 2.6
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 25 2.6
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch... 25 2.6
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 25 4.6
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe... 25 4.6
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 24 6.1
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 24 6.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 24 6.1
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 24 8.0
>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 61
Score = 64.5 bits (150), Expect = 5e-12
Identities = 31/51 (60%), Positives = 38/51 (74%)
Frame = +2
Query: 50 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFNGIKGFARRVT 202
MAKSKNHTNHNQN+KAHRNGIK+P+K R++S +K F + FA R T
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAK-FRRNQKFANRGT 50
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.4 bits (53), Expect = 2.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 181 FDSVKNFGSMRKGGFVPGLPWLFDTISVSFA 89
FDS KN + +VPGL +FD I V+ A
Sbjct: 108 FDSEKNKLDYKAVTYVPGLYKIFDEIIVNAA 138
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 2.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 23 FKVD*KLIKMAKSKNHTNHNQNRKAHRNGIKKPRK 127
+K+D + +AK + NHN ++ A + I +PRK
Sbjct: 333 YKLD--ICGLAKRDDRKNHNHSKPATQANILQPRK 365
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 25.4 bits (53), Expect = 2.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 65 NHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFN 172
+H NH+++RK + + +T H LA I N
Sbjct: 850 DHINHSKDRKLNTLALSSLLRTNHPDVLAVLDSIMN 885
>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 25.4 bits (53), Expect = 2.6
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +2
Query: 38 KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAH 154
+L + +S TN +Q + H N KT H+ +H
Sbjct: 138 QLTQQQQSLPQTNEHQRARTHSNANNHFTKTHHQGQRSH 176
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 24.6 bits (51), Expect = 4.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 81 TKTAKLTEMVSKSQGRPGTN 140
T A +T++VSK G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239
>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 537
Score = 24.6 bits (51), Expect = 4.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 104 NGIKKPRKTRHESTLAHGSKIFNGI 178
NGIK+ KTRH S +A I G+
Sbjct: 38 NGIKRGLKTRHVSMMALAGIIGPGV 62
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 24.2 bits (50), Expect = 6.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 68 HTNHNQNRKAHRNGIKKPRKTRHES 142
HTN +NR+ + G K R R E+
Sbjct: 887 HTNPQENRRRDKGGSVKRRNERTEN 911
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 24.2 bits (50), Expect = 6.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 58 LCHFDEFSIHFESED 14
+CHF+E SI ES++
Sbjct: 1 MCHFNELSIEIESKN 15
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 24.2 bits (50), Expect = 6.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 6 LVLSSDSKWIENSSKWQSQRIIQ 74
L+ + S+W S +W+S R IQ
Sbjct: 1462 LIFCTPSQWDSLSKRWRSMRSIQ 1484
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 23.8 bits (49), Expect = 8.0
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 38 KLIKMAKS-KNHTNHNQNRKAHRNGIKKPRKTRHESTLAH 154
+L+ +A S K H+ + ++K+++NG KK RK +S H
Sbjct: 169 RLLDLALSEKTHSLNKASKKSNKNGDKK-RKHVSKSNSKH 207
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,140,247
Number of Sequences: 5004
Number of extensions: 18317
Number of successful extensions: 58
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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