Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_H13
(357 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0661 - 16726958-16726966,16727133-16727234 54 2e-08
01_02_0115 - 11248021-11248101,11249017-11249118 54 2e-08
07_01_0629 - 4695778-4696077,4696242-4696406,4696497-4696673,469... 33 0.087
07_03_1188 + 24671022-24672482 28 2.5
04_03_0153 + 11919769-11919880,11920190-11920488,11921909-119220... 27 5.7
03_01_0124 + 971213-971341,971741-971769,971877-972078,972839-97... 27 5.7
11_06_0626 - 25620409-25620706,25620814-25620943,25621034-256212... 26 7.6
02_05_0116 - 25976234-25976394,25976485-25976701,25977345-259774... 26 7.6
>05_03_0661 - 16726958-16726966,16727133-16727234
Length = 36
Score = 54.4 bits (125), Expect = 2e-08
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +2
Query: 50 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 145
MAKSKNHT HNQ+ KAH+NGIKKP++ R ST
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTST 32
>01_02_0115 - 11248021-11248101,11249017-11249118
Length = 60
Score = 54.4 bits (125), Expect = 2e-08
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +2
Query: 50 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 145
MAKSKNHT HNQ+ KAH+NGIKKP++ R ST
Sbjct: 1 MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTST 32
>07_01_0629 -
4695778-4696077,4696242-4696406,4696497-4696673,
4697157-4697455,4697589-4697751,4697897-4698088,
4698211-4698385,4698527-4698741,4698948-4699385
Length = 707
Score = 32.7 bits (71), Expect = 0.087
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = +3
Query: 3 LLVLSSDSK---WIENSSKWQSQRIIQIITKT-AKLTEMVSKSQGRPGTNPPLRMDPKFL 170
+L SS+ K WI N +K+ I + T T A++ + V GR N P R PK +
Sbjct: 525 ILASSSEMKQNHWIRNVAKYHKLPIFVVKTNTMAQIVKAVRMIVGRDKLNAPTRKQPKVV 584
Query: 171 TESKVLQEG*PEASQATRE 227
+++ P+ + E
Sbjct: 585 VGEIEIEDDAPKRKPSLEE 603
>07_03_1188 + 24671022-24672482
Length = 486
Score = 27.9 bits (59), Expect = 2.5
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 211 LASGYPSCKTFD-SVKNFGSMRKGGFVPGL 125
L SGY + D +++ G R+GGF PGL
Sbjct: 220 LVSGYANAGKLDHALRLIGETRRGGFQPGL 249
>04_03_0153 +
11919769-11919880,11920190-11920488,11921909-11922024,
11922113-11922248,11922959-11923006,11924130-11924228,
11924317-11924385,11924465-11924599,11924687-11924755,
11925221-11925276,11925465-11925624,11926534-11926698,
11927484-11927568,11927646-11927849,11928396-11928487,
11928571-11928613,11930727-11930884,11931520-11931630,
11931947-11932012,11933716-11933784,11934181-11934255,
11934330-11934506,11934598-11934683,11936259-11936313,
11936901-11936939,11938105-11938230,11938319-11938432,
11939208-11939265,11939485-11939623,11939698-11939783,
11939842-11940041
Length = 1148
Score = 26.6 bits (56), Expect = 5.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 87 TAKLTEMVSKSQGRPGTNPPLRMDPKFLTESK 182
T EM+ +S+G P N P + K LTES+
Sbjct: 505 TKSYLEMILESKGVPRLNTPPPISRKLLTESQ 536
>03_01_0124 +
971213-971341,971741-971769,971877-972078,972839-973081,
973172-973273,973743-974180
Length = 380
Score = 26.6 bits (56), Expect = 5.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 199 YPSCKTFDSVKNFGSMRKGGFVPGLPWLFDTISVSFAVLVMICMIL 62
YP+ F S K M G F+PGL + AV+++I +IL
Sbjct: 110 YPAQIMFKSTKVLPVMIMGAFIPGLRRKYPFHEYISAVMLVIGLIL 155
>11_06_0626 -
25620409-25620706,25620814-25620943,25621034-25621250,
25621894-25622015,25622119-25622267,25622642-25622759,
25622840-25623185
Length = 459
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = -3
Query: 220 VAWLASG--YP--SCKTFDSVKNFGSMRKGGFVPG 128
VA LA G +P S T D+++N G + GG PG
Sbjct: 86 VALLAFGTSFPQISLATIDAIRNLGQLTAGGLGPG 120
>02_05_0116 -
25976234-25976394,25976485-25976701,25977345-25977466,
25977570-25977718,25978095-25978212,25978293-25978638
Length = 370
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = -3
Query: 220 VAWLASG--YP--SCKTFDSVKNFGSMRKGGFVPG 128
VA LA G +P S T D+++N G + GG PG
Sbjct: 86 VALLAFGTSFPQISLATIDAIRNLGQLTAGGLGPG 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,308,955
Number of Sequences: 37544
Number of extensions: 118702
Number of successful extensions: 437
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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