Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H13
         (357 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)                      30   0.48 
SB_40598| Best HMM Match : Stap_Strp_toxin (HMM E-Value=2.7)           29   0.84 
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)               29   1.1  
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_24918| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.4  
SB_6986| Best HMM Match : Ribosomal_L29e (HMM E-Value=1.6)             27   3.4  
SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07)                  27   3.4  
SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)                      27   3.4  
SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1)             27   4.5  
SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   4.5  
SB_31788| Best HMM Match : Kazal_1 (HMM E-Value=0)                     27   5.9  
SB_54637| Best HMM Match : DUF1621 (HMM E-Value=3)                     26   7.8  
SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08)                   26   7.8  
SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)                   26   7.8  
SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.8  
SB_3594| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.8  

>SB_25197| Best HMM Match : TatC (HMM E-Value=1.8)
          Length = 622

 Score = 30.3 bits (65), Expect = 0.48
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 41  LIKMAKSKNHTNHNQNRKAH-RNGIKKPRKTRHESTLAHGSKI 166
           LI   KSK+H NHN+  + H  + I K     H+ T+A   K+
Sbjct: 571 LIVYCKSKHHANHNKGCERHFEDDINKCGCRNHDHTIAQYYKL 613


>SB_40598| Best HMM Match : Stap_Strp_toxin (HMM E-Value=2.7)
          Length = 192

 Score = 29.5 bits (63), Expect = 0.84
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 53  AKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKI 166
           +K+ N TN NQ         K P+KT  ++T+   S +
Sbjct: 153 SKNNNQTNRNQGNTGITENTKSPKKTNIDATVPSDSSV 190


>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
          Length = 413

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 47  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 145
           K AKSK   NH ++ K  R   KK ++T  +ST
Sbjct: 145 KNAKSKIKRNHGEDNKPKRISTKKRKRTDKDST 177


>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +2

Query: 92  KAHRNGIKKPRKTRHES 142
           K HRNGIKKPR  R+ S
Sbjct: 175 KWHRNGIKKPRTNRYPS 191


>SB_24918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = -1

Query: 156 PCARVDSCLVFLGFLIP 106
           PCA + SC++FLGF++P
Sbjct: 78  PCALI-SCMIFLGFILP 93


>SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 39  NSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLRMDPK 164
           NS+ WQ+  I + + K     EM S  + R   N   + DPK
Sbjct: 88  NSTSWQNINIHESLAKELARDEMQSNERRRAQANSEQKTDPK 129


>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 548

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 47  KMAKSKNHTNHNQNRKAH-RNGIKKPRKTRHESTLAHGSKIFNGIKGFARRVT*SQPSNS 223
           + ++S+   + +++R++  R+  ++PR+   +   +   +          R    +   S
Sbjct: 208 RRSRSRTRRSRSRSRRSRSRSRDRRPRRRSRDRERSRERRSRRSRDKSRSREKSRERGGS 267

Query: 224 RGRLXEKLPXKQRPRNE 274
           RGR  EK P KQR +++
Sbjct: 268 RGRSAEKSPEKQRDKSD 284


>SB_6986| Best HMM Match : Ribosomal_L29e (HMM E-Value=1.6)
          Length = 371

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +2

Query: 56  KSKNHTNHNQNRKAHRNGIKKPRKTRH-ESTLAHGSKI 166
           +S N T HN+N++A ++G  + ++ RH ES  A  +KI
Sbjct: 216 RSNNVTKHNRNQQA-KDGEPRKKRLRHGESDHAQRAKI 252


>SB_55750| Best HMM Match : PWWP (HMM E-Value=6.4e-07)
          Length = 532

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 86  NRKAHRNGIKKPRKTRHESTLAHGSKIFNGIKGFARRVT*SQPS 217
           NR+   N   KPR  RHE T ++GSK  N +   +  +  S PS
Sbjct: 90  NRRGIVNLSPKPRTLRHEKT-SNGSKKGNSLPSQSTSLKSSNPS 132


>SB_33977| Best HMM Match : CUE (HMM E-Value=0.52)
          Length = 1183

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 9/36 (25%), Positives = 18/36 (50%)
 Frame = +3

Query: 36   ENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNP 143
            E   +W  +R++ +  +  KL E +  ++GR    P
Sbjct: 1031 EKYREWHMKRVLPLFVQDTKLREKIENAEGRTSGGP 1066


>SB_51620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 50  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHE 139
           +  S    +HN  +   R GIK+PR+++ E
Sbjct: 342 LTTSPTMISHNNQQNDSRRGIKRPRRSQEE 371


>SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1)
          Length = 535

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +2

Query: 47  KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIF 169
           K  K K   +H  N     NG+  P+K + +    H  K F
Sbjct: 92  KFKKIKKEGDHGNNNTEKPNGVSSPKKKKKKHHHKHEEKHF 132


>SB_34| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 62  KNHTN-HNQNRKAHRNGIKKPRKTRHESTLAHGSKIFN 172
           +NH   HN+NRK   N I+K    R+    +   +I N
Sbjct: 66  RNHKEPHNRNRKEPGNRIRKVEHNRNRKDYSRDERIHN 103


>SB_31788| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 352

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 38  KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHEST 145
           K IK AK     N+N  RK    G K+P++ R ++T
Sbjct: 86  KPIKKAKVSK-VNNNGRRKEKNRGQKRPKRCRPDTT 120


>SB_54637| Best HMM Match : DUF1621 (HMM E-Value=3)
          Length = 265

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 50  MAKSKNHT-NHNQNRKAHRNGIKKPRKTRHESTLAH 154
           +   +NH  N N++ KA   G K+P   +H   LA+
Sbjct: 117 LVSCENHKINRNKDHKAFTEGCKEPEGPKHRYFLAN 152


>SB_48996| Best HMM Match : ASC (HMM E-Value=7.1e-08)
          Length = 294

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 92 CGFGYDLYDSLT 57
          CGFGY LY S+T
Sbjct: 41 CGFGYQLYKSIT 52


>SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)
          Length = 538

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 92 CGFGYDLYDSLT 57
          CGFGY LY S+T
Sbjct: 41 CGFGYQLYKSIT 52


>SB_34511| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2492

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/56 (19%), Positives = 30/56 (53%)
 Frame = +2

Query: 56   KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFNGIKGFARRVT*SQPSNS 223
            ++++ + H+++ K  +   K     +  S++ H   +  G+K F+R+   S+ S++
Sbjct: 1558 RARDRSRHSKDSKTDKAMAKVKAHAKWCSSIRHTDHVTQGLKAFSRKHASSRSSHA 1613


>SB_3594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +2

Query: 41  LIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRH 136
           +I + +   H +HN +R  + N IK   + RH
Sbjct: 114 VIGVVRHVRHDDHNLSRSHNNNAIKSRNQNRH 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,583,076
Number of Sequences: 59808
Number of extensions: 143111
Number of successful extensions: 409
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)