Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_H13
(357 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) simi... 58 2e-09
At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) simi... 58 2e-09
At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein, A... 33 0.074
At3g25950.1 68416.m03234 hypothetical protein 29 0.69
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 28 2.1
At1g12600.1 68414.m01463 hypothetical protein 27 3.7
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil... 26 6.4
At3g13760.1 68416.m01736 DC1 domain-containing protein contains ... 26 6.4
At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containi... 26 6.4
At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains ... 26 6.4
>At3g06680.1 68416.m00788 60S ribosomal protein L29 (RPL29B) similar
to 60S ribosomal protein L29 GB:P25886 from (Rattus
norvegicus)
Length = 83
Score = 58.0 bits (134), Expect = 2e-09
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = +2
Query: 47 KMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFNGIKGFARR 196
+MAKSKNHT HNQ+ KAH+NGIKKPR+ RH T K + +AR+
Sbjct: 22 EMAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRN-QRYARK 70
>At3g06700.1 68416.m00792 60S ribosomal protein L29 (RPL29A) similar
to ribosomal protein L29 GI:7959366 [Panax ginseng]
Length = 61
Score = 57.6 bits (133), Expect = 2e-09
Identities = 27/49 (55%), Positives = 33/49 (67%)
Frame = +2
Query: 50 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFNGIKGFARR 196
MAKSKNHT HNQ+ KAH+NGIKKPR+ RH T K + +AR+
Sbjct: 1 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRN-QRYARK 48
>At4g10220.1 68417.m01676 hypothetical protein IB1C3-1 protein,
Arabidopsis thaliana, AJ011845
Length = 400
Score = 32.7 bits (71), Expect = 0.074
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 62 KNHTNHNQNRKAHRNGIKKPRKTRHESTLAH 154
KNHT H++ R ++ G K RKT +T H
Sbjct: 88 KNHTFHHKMRMSYSEGSKMKRKTHRNTTFGH 118
>At3g25950.1 68416.m03234 hypothetical protein
Length = 251
Score = 29.5 bits (63), Expect = 0.69
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 181 FDSVKNFGSMRKGGFVPGLPWLFDTISVSFAVLVMICMIL 62
+D +GS G VP WL + + FA+LV I +L
Sbjct: 195 YDMATFYGSGAADGVVPRWAWLSWLVVIGFAILVSILWVL 234
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 50 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLAHGSKIFNGIKGFARRV 199
+ +S H + + + NG KK +KTR E K+ ++ RRV
Sbjct: 237 VGRSSRHEDSPKRKSVEDNGEKKEKKTREEELEDEQKKLDEEVEKRRRRV 286
>At1g12600.1 68414.m01463 hypothetical protein
Length = 349
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 199 YPSCKTFDSVKNFGSMRKGGFVPGLPWLFDTISVSFAVLVMICMIL 62
YP+ F S K M G F+PGL + A+L++I +IL
Sbjct: 111 YPAQIMFKSTKVLPVMVMGAFIPGLRRKYPVHEYISAMLLVIGLIL 156
>At4g01925.1 68417.m00256 DC1 domain-containing protein low
similarity to UV-B light insensitive ULI3 [Arabidopsis
thaliana] GI:17225050; contains Pfam profile PF03107:
DC1 domain
Length = 399
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 110 YHFCELCGFGYDLYDSLTLP 51
YH CE CGF DLY ++ P
Sbjct: 65 YH-CETCGFDVDLYCAMYPP 83
>At3g13760.1 68416.m01736 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 652
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 110 YHFCELCGFGYDLYDSLTLPF**VFNP 30
++ C +CGF DL +LTLP + NP
Sbjct: 182 FYRCLICGFCLDLSCALTLPPLTIANP 208
>At1g62720.1 68414.m07079 pentatricopeptide (PPR) repeat-containing
protein contains multiple PPR repeats Pfam Profile:
PF01535
Length = 426
Score = 26.2 bits (55), Expect = 6.4
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 110 YHFCELCGFGYDLY 69
+H E+CG G+DLY
Sbjct: 33 FHHMEVCGIGHDLY 46
>At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains
Pfam PF04153: NOT2 / NOT3 / NOT5 family; similar to Rga
(GI:1658504) [Drosophila melanogaster]
Length = 444
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 99 TEMVSKSQGRPGTNPPLRMDPKF 167
TE + K+ G P +N P ++DP+F
Sbjct: 375 TENLHKTFGSPWSNEPSKVDPEF 397
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,034,907
Number of Sequences: 28952
Number of extensions: 100288
Number of successful extensions: 327
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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