Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H12
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)           31   0.82 
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)               29   4.4  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 608 LPALMSFSTTRTHPKAIKQKFRMWKQIKLNHSE 510
           LP  M   T +T PK + Q FR +KQ++  H +
Sbjct: 40  LPPNMRLQTPKTGPKGVIQDFRRYKQLETEHKK 72


>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
          Length = 404

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 193 KVIQPMKELKLFARATETVVIDRIEG*KFTLQRFDTVRAAVVHRLT 56
           KV+QP K L+ FAR    +   +++    T+ R  T+ A + HRL+
Sbjct: 118 KVLQPNKNLRAFARRCALLTDGQVDLLTSTMLRKRTLAATMAHRLS 163


>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = -2

Query: 394 RLVTAATGSMGPADGALLLSXSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSARQN 215
           RL+  +TG+ G A    + S + KH       P S P  P   PS    +G P    ++ 
Sbjct: 262 RLINRSTGNSGTASPTFITSSANKHAQL----PPSAPASPK--PSTPSSEGMPPAGRKEP 315

Query: 214 KVNN 203
            + N
Sbjct: 316 SIAN 319


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 225 AEVSGDPFCGDIDGVPLGQRGVLPGSTQINRKCFREXESRRAPSAGPMLPVAAVTRRTSR 404
           +E+S + + G   G+  G+ G++     +   CFR+    + P+  P  P     R+T R
Sbjct: 484 SEISRNSYGGCESGLTCGKDGMVIAWDGVG--CFRDLRPSKTPTTEPQRPETTTKRKTQR 541



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +3

Query: 225  AEVSGDPFCGDIDGVPLGQRGVLPGSTQINRKCFREXESRRAPSAGPMLPVAAVTRRTSR 404
            +E+S + + G   G+  G+ G++     +   CFR+    + P+  P  P     R+T R
Sbjct: 849  SEISRNSYGGCESGLTCGKDGMVIAWDGLG--CFRDLRPSKTPTTEPQRPKTTTKRKTQR 906


>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
          Length = 287

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +3

Query: 348 APSAGPMLPVAAVTRRTSRTVPHTYPSSV 434
           AP+  P  P AA      R+VP T PSSV
Sbjct: 112 APAPAPAAPSAAAAPAPVRSVPSTSPSSV 140


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 372  PVAAVTRRTSRTVPHTYPSSVTLNSEPRCC*AQPTIQL 485
            PVAA+  +T+++VPHT  +  T    P  C  Q T  L
Sbjct: 2027 PVAALATQTTQSVPHTMGNPTT--PRPPSCLTQQTSTL 2062


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,483,724
Number of Sequences: 59808
Number of extensions: 384635
Number of successful extensions: 1120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)