Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H12
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    31   0.54 
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    31   0.54 
U41270-3|ABC71846.1|  254|Caenorhabditis elegans Hypothetical pr...    29   2.9  

>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 364 GPADGALLLSXSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSA 224
           GPA GA   + SR     +  +P +T R P+ TP+  P + +P  S+
Sbjct: 14  GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSS 60


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 364 GPADGALLLSXSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSA 224
           GPA GA   + SR     +  +P +T R P+ TP+  P + +P  S+
Sbjct: 143 GPAAGASAKTPSRMPARSVPQKPVTTMRTPAATPAAPPTRPTPSRSS 189


>U41270-3|ABC71846.1|  254|Caenorhabditis elegans Hypothetical
           protein AH9.3 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 301 EPGSTPRCPSGTPSMSPQKGSPDTSARQNKVNN 203
           E GS+P+  + T    P+K S D +A +N+V++
Sbjct: 44  EAGSSPKATTTTDGEVPEKDSADENAEKNQVDS 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,201,985
Number of Sequences: 27780
Number of extensions: 281440
Number of successful extensions: 928
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)