Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H12
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20710.1 68418.m02459 beta-galactosidase, putative / lactase,...    29   2.0  
At5g03180.1 68418.m00266 zinc finger (C3HC4-type RING finger) fa...    29   3.6  
At1g77600.1 68414.m09035 expressed protein weak similarity to Pd...    28   6.2  
At1g64300.1 68414.m07287 protein kinase family protein contains ...    28   6.2  
At5g15840.1 68418.m01853 zinc finger protein CONSTANS (CO) ident...    27   8.2  

>At5g20710.1 68418.m02459 beta-galactosidase, putative / lactase,
           putative strong similarity to beta-galactosidase
           precursor (EC 3.2.1.23) (Lactase) SP:P49676 from
           [Brassica oleracea]
          Length = 769

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = -2

Query: 313 FICVE--PGSTPRCPSGTPSMSPQKGSPDTSARQNKVNNTKAKVIQPMKELKLFARATET 140
           ++C E   G  P      P+M  +  +P      N++ N   K+++ MKE KLFA     
Sbjct: 62  YVCAEWNYGGFPVWLHNMPNMKFRTVNPSF---MNEMQNFTTKIVKMMKEEKLFASQGGP 118

Query: 139 VVIDRIE 119
           +++ +IE
Sbjct: 119 IILAQIE 125


>At5g03180.1 68418.m00266 zinc finger (C3HC4-type RING finger)
           family protein various predicted proteins, Arabidopsis
           thaliana ; contains Pfam profile PF00097: Zinc finger,
           C3HC4 type (RING finger)
          Length = 462

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = -2

Query: 379 ATGSMGPADGALLLSXSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSARQNKVNNT 200
           A G    A+G+L+ S   K F F    P S+PR      SMSP      T+ +  K  N 
Sbjct: 57  AHGDFLRANGSLIHSPVSKRFKF---SPMSSPRTGRRVGSMSPSSSRNRTNQKNFKNRNH 113

Query: 199 KAKV 188
            A +
Sbjct: 114 SADI 117


>At1g77600.1 68414.m09035 expressed protein weak similarity to Pds5
           (GI:16751524) [Schizosaccharomyces pombe]; weak
           similarity to androgen-induced prostate proliferative
           shutoff associated protein (GI:4559410) [Homo sapiens]
          Length = 1285

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 35  TSGRGEASXSMHDRGTDSVEPLQCKLLTFNSVYNDS 142
           TSG  + + S+ +R  D +EPL C  LT   +  DS
Sbjct: 220 TSGADKLASSLIERCADRLEPLICSFLTSCFMEKDS 255


>At1g64300.1 68414.m07287 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 717

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -2

Query: 298 PGSTPRCPSGTPSMSPQKGSPDTSARQNKVNNTKAKVIQPMKEL 167
           PGS+P  P  TP +S    SP   +  NK N      + PM  L
Sbjct: 657 PGSSPIKPRSTPKVSSPL-SPFGRSSSNKANKDTRLPLSPMSPL 699


>At5g15840.1 68418.m01853 zinc finger protein CONSTANS (CO)
           identical to Zinc finger protein CONSTANS SP:Q39057 from
           [Arabidopsis thaliana]
          Length = 373

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 307 CVEPGSTPRCPSGTPSMSPQKGSPDTSARQNKVNNTKAKVIQPMKELK 164
           CV   S PR P GT    P   S   +  Q    + +A+V++  ++ K
Sbjct: 271 CVTTASHPRTPKGTVEQQPDPASQMITVTQLSPMDREARVLRYREKRK 318


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,236,865
Number of Sequences: 28952
Number of extensions: 249200
Number of successful extensions: 700
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)