Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_H08
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 40 4e-04
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 33 0.047
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 33 0.047
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 27 3.1
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 26 4.1
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 26 5.4
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c... 26 5.4
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 7.2
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.2
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 9.5
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 25 9.5
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 39.5 bits (88), Expect = 4e-04
Identities = 24/63 (38%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +2
Query: 152 EILTLQFGHYSNYVGAHFWNIQELSFDYSGTATTDLNHDILYREGQTSRNEVTYT-PRLL 328
EILT+ FG SN+ HFWN QE F Y +N + +R + E T PR
Sbjct: 3 EILTVTFGRKSNFCWTHFWNTQESYFVYDPNDHAKVNVNTNFRVLKKRDPEAIVTVPREC 62
Query: 329 IAD 337
I D
Sbjct: 63 IYD 65
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 32.7 bits (71), Expect = 0.047
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Frame = +2
Query: 149 REILTLQFGHYSNYVGAHFWN--IQELSFDYSGT--ATTDLNHD---ILYREGQTSRNEV 307
REI+ +Q G N VGA FW+ E D +G T++ H+ + + E +
Sbjct: 2 REIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGK--- 58
Query: 308 TYTPRLLIADLKGALKTLPQSG 373
Y PR ++ DL+ +SG
Sbjct: 59 -YVPRAVLVDLEPGTMDAVKSG 79
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 32.7 bits (71), Expect = 0.047
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Frame = +2
Query: 149 REILTLQFGHYSNYVGAHFWNIQELSFDY----SGT----ATTDLNH-DILYREGQTSRN 301
REI+TLQ G N +G+ FW Q+L ++ GT AT ++ D+ + + +R
Sbjct: 3 REIITLQAGQCGNQIGSQFW--QQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTR- 59
Query: 302 EVTYTPRLLIADLK 343
Y PR ++ DL+
Sbjct: 60 ---YIPRAILIDLE 70
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 619 FLITSVLILIYYIHSSRMKTRIQVICPSDYILFK 518
FL VL +Y+ SS+ T IQ + DY L++
Sbjct: 433 FLDGFVLRNVYFRESSKEATEIQTLIDEDYALYQ 466
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +3
Query: 189 MLVPIFGIYKSSVLITVVLQ 248
+LVPIF +YK++ L+ ++LQ
Sbjct: 120 LLVPIFVVYKAAPLLKMLLQ 139
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 284 GQTSRNEVTYTPRLLIADLKGALKTLPQS 370
G+T +N VT PR ++ D++ + L Q+
Sbjct: 22 GETKQNTVTEVPRTVLQDVEANIAALMQA 50
>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1111
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 389 RHPRDHHFVVEFLKPLSNQLSVIWVCKLLHSSTF 288
R P D F+VE L + ++ +C LLHS +
Sbjct: 606 RLPWDPQFLVESLTDSTIYMAYYTICHLLHSDVY 639
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 212 IQELSFDYSGTATTDLNHDILYREGQTSR 298
+Q +SF Y GT+ LN DI ++ +SR
Sbjct: 675 VQHMSFQYPGTSKPQLN-DISFQVSLSSR 702
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Frame = -3
Query: 529 ILFKIVIFLSISYC--CLNRINSSEILVFFWRGXFYFXYCIPL*IC--FLCVIRE 377
++ I + S+ Y C+ SSE L W+ Y C + +C +LC E
Sbjct: 1005 LVTSIFLLSSLQYLGICIGINQSSEFLSPIWKKKTYVCLCTTIGLCNIYLCFANE 1059
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +2
Query: 461 LAAIDSVQTTVADGKKDYNLEXNVITWTDYLYPRFHSRTVNVVNEYQHGSNKEAFDIYP 637
L DS+ + G K +NL+ ++ +DY S+T+ ++ + S +E +++P
Sbjct: 1286 LPPYDSISSVSTLGDKYWNLKIDLDNNSDYRELLRESQTLTLMPYDRTSSKEEPLNLFP 1344
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 437 PPPEKNQYLAAIDSVQTTVADGKKDYN--LEXNVITWTDYL 553
P PEK ++L + V D K YN +E + TD++
Sbjct: 21 PTPEKGEFLGRVIRVAFNPIDWKTLYNASIEKGTVGGTDFV 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,661,589
Number of Sequences: 5004
Number of extensions: 54762
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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