Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_H08
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53927| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.8)             149   2e-36
SB_39519| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.4)             146   1e-35
SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)                     38   0.005
SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)                     36   0.022
SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.022
SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)                     36   0.022
SB_54645| Best HMM Match : DUF1700 (HMM E-Value=2.5)                   31   0.81 
SB_5166| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.5  

>SB_53927| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.8)
          Length = 582

 Score =  149 bits (361), Expect = 2e-36
 Identities = 74/184 (40%), Positives = 111/184 (60%), Gaps = 17/184 (9%)
 Frame = +2

Query: 143 STREILTLQFGHYSNYVGAHFWNIQELSFDYSGTA-TTDLNHDILYREGQTSRNEVTYTP 319
           + RE++TLQFGHY+N+VG H+WNIQE SF Y G +  +++NHD L+REG T   + TYTP
Sbjct: 26  TVREVITLQFGHYANFVGTHWWNIQESSFCYDGASPKSEINHDCLFREGLTVTGQETYTP 85

Query: 320 RLLIADLKGALKTLPQSGGLSDDAQETDLQWD-TVXKIEXPPPEKNQYLAAIDSV----- 481
           RLL+ DLKG+L+ L   G L +   +  + W+  +   E  P +KN++ A I+       
Sbjct: 86  RLLLYDLKGSLRNLSTEGLLYESPSKKYVDWEGEITIYETNPDQKNEFQADIEKTMVVES 145

Query: 482 -------QTTVADGK---KDYNLEXNVITWTDYLYPRFHSRTVNVVNEYQHGSNKEAFDI 631
                  QT  A G+   K YNL+  ++ W+D+L  + H R+VN++NEY H ++   F +
Sbjct: 146 EESGMDSQTGDATGELSDKVYNLDDEIVVWSDFLGTQLHPRSVNIINEYSHDADMSPFSV 205

Query: 632 YPTG 643
           Y  G
Sbjct: 206 YGYG 209


>SB_39519| Best HMM Match : Adeno_E3_CR1 (HMM E-Value=1.4)
          Length = 582

 Score =  146 bits (355), Expect = 1e-35
 Identities = 73/184 (39%), Positives = 110/184 (59%), Gaps = 17/184 (9%)
 Frame = +2

Query: 143 STREILTLQFGHYSNYVGAHFWNIQELSFDYSGTAT-TDLNHDILYREGQTSRNEVTYTP 319
           + RE++TLQFGHY+N+VG H+WNIQE SF Y   +  +++NHD L+REG T   + TYTP
Sbjct: 26  TVREVITLQFGHYANFVGTHWWNIQESSFCYDAASPKSEINHDCLFREGLTVTGQETYTP 85

Query: 320 RLLIADLKGALKTLPQSGGLSDDAQETDLQWD-TVXKIEXPPPEKNQYLAAIDSV----- 481
           RLL+ DLKG+L+ L   G L +   +  + W+  +   E  P +KN++ A I+       
Sbjct: 86  RLLLYDLKGSLRNLSTEGLLYESPSKKYVDWEGEITIYETNPDQKNEFQADIEKTMVVES 145

Query: 482 -------QTTVADGK---KDYNLEXNVITWTDYLYPRFHSRTVNVVNEYQHGSNKEAFDI 631
                  QT  A G+   K YNL+  ++ W+D+L  + H R+VN++NEY H ++   F +
Sbjct: 146 EESGMDSQTGDATGELSDKVYNLDDEIVVWSDFLGTQLHPRSVNIINEYSHDADMSPFSV 205

Query: 632 YPTG 643
           Y  G
Sbjct: 206 YGYG 209


>SB_17879| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = +2

Query: 149 REILTLQFGHYSNYVGAHFWNIQELSFDYSGTATTDLNHDILYREGQTSRNEVT---YTP 319
           REI++LQ G   N +GA FW +         T T   + D+         NE T   Y P
Sbjct: 2   REIVSLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61

Query: 320 RLLIADLKGALKTLPQSG 373
           R ++ DL+       +SG
Sbjct: 62  RSVLIDLEPGTMDSVRSG 79


>SB_47198| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 446

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = +2

Query: 149 REILTLQFGHYSNYVGAHFWNIQELSFDYSGTATTDLNHDILYREGQTSRNEVT---YTP 319
           REI+  Q G   N +GA FW +         T T   + D+         NE T   Y P
Sbjct: 2   REIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61

Query: 320 RLLIADLKGALKTLPQSG 373
           R ++ DL+       +SG
Sbjct: 62  RAILVDLEPGTMDSVRSG 79


>SB_18752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
 Frame = +2

Query: 149 REILTLQFGHYSNYVGAHFWNIQELSFDYSGTATTDLNHDILYREGQTSRNEVT---YTP 319
           REI+  Q G   N +GA FW +         T T   + D+         NE T   Y P
Sbjct: 2   REIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVP 61

Query: 320 RLLIADLKGALKTLPQSG 373
           R ++ DL+       +SG
Sbjct: 62  RAILVDLEPGTMDSVRSG 79


>SB_17881| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 458

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
 Frame = +2

Query: 134 LKMSTREILTLQFGHYSNYVGAHFWNIQELSFDYSGTATTDLNHDILYREGQTSRNEVT- 310
           L    REI+  Q G   N +GA FW +         T T   + D+         NE T 
Sbjct: 210 LLFKMREIVHCQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATG 269

Query: 311 --YTPRLLIADLKGALKTLPQSG 373
             Y PR ++ DL+       +SG
Sbjct: 270 GKYVPRAVLVDLEPGTMDSVRSG 292


>SB_54645| Best HMM Match : DUF1700 (HMM E-Value=2.5)
          Length = 371

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = +3

Query: 168 SLVTIQIMLVPIFGIYKSSVLITVVLQLPI*ITIFY 275
           SL+   ++++ IFG+ ++  +  +VL LP+  ++FY
Sbjct: 245 SLIIFHLLMIGIFGLKENFTIALLVLPLPVITSVFY 280


>SB_5166| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 768

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
 Frame = +2

Query: 302 EVTYTPRLLIADLKGALKTLPQSGGLSDDAQETDLQWDTVXKIEXPPPEKNQYLAAIDSV 481
           E+   PR+L+ADL  A    P   G  + +       D+V   E   PEK ++L + +S 
Sbjct: 603 EIASRPRVLMADLTSATPLSPTESGFVEGSSV-----DSVFDSEKAAPEKPRHLPSSESP 657

Query: 482 Q---TTVADGKK 508
               T+++ G K
Sbjct: 658 YSSFTSISSGDK 669


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,388,744
Number of Sequences: 59808
Number of extensions: 385552
Number of successful extensions: 887
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)