Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_H08
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g37190.1 68417.m05265 expressed protein 83 1e-16
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 34 0.071
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 34 0.094
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 34 0.094
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 34 0.094
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 34 0.094
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 34 0.094
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 33 0.12
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 33 0.12
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 32 0.29
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 31 0.50
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 31 0.50
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff... 29 3.5
At3g01100.1 68416.m00015 early-responsive to dehydration protein... 28 6.2
At4g29060.1 68417.m04157 elongation factor Ts family protein sim... 27 8.2
>At4g37190.1 68417.m05265 expressed protein
Length = 562
Score = 83.4 bits (197), Expect = 1e-16
Identities = 58/185 (31%), Positives = 91/185 (49%), Gaps = 20/185 (10%)
Frame = +2
Query: 149 REILTLQFGHYSNYVGAHFWNIQELSFDYSGTATTD-------LNHDILYREGQTSRNEV 307
REI+T+Q G ++N+VG+HFWN Q+ + +D L+ D+LYR G+T +
Sbjct: 2 REIVTIQVGEFANFVGSHFWNFQDELLGLASDPESDPIFRNHNLDMDVLYRSGETQQGVA 61
Query: 308 TYTPRLLIADLKGALKTLPQSGGL----SDDAQETDLQW-DTVXKIEXPPPEKNQYLAAI 472
TYTPRL+ +LKGAL T+ G L S ++ W V P ++N +L ++
Sbjct: 62 TYTPRLVSVNLKGALGTMSSRGTLYNEGSSSRSDSSATWFGDVDTQRSEPRKRNLFLQSL 121
Query: 473 DSVQTTVADGK------KDY--NLEXNVITWTDYLYPRFHSRTVNVVNEYQHGSNKEAFD 628
+ V K KD L+ V WTD+ +H +++ +N S +AF+
Sbjct: 122 YEEEHVVGKEKAKEIEDKDIVGCLDEEVECWTDFSKSHYHPQSLYELNGLWMDS--QAFN 179
Query: 629 IYPTG 643
Y G
Sbjct: 180 NYGIG 184
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 34.3 bits (75), Expect = 0.071
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Frame = +2
Query: 149 REILTLQFGHYSNYVGAHFWNI--QELSFD----YSG-TATTDLNH-DILYREGQTSRNE 304
REIL +Q G N +G+ FW + E D YSG TA L ++ Y E R
Sbjct: 2 REILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERINVYYNEASGGR-- 59
Query: 305 VTYTPRLLIADLKGALKTLPQSG 373
Y PR ++ DL+ +SG
Sbjct: 60 --YVPRAVLMDLEPGTMDSIRSG 80
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 33.9 bits (74), Expect = 0.094
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Frame = +2
Query: 149 REILTLQFGHYSNYVGAHFWNI--QELSFDYSG--TATTDLNHD---ILYREGQTSRNEV 307
REIL +Q G N +GA FW + E D +G T +DL + + Y E R
Sbjct: 2 REILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGR--- 58
Query: 308 TYTPRLLIADLK-GALKTL 361
+ PR ++ DL+ G + +L
Sbjct: 59 -FVPRAVLMDLEPGTMDSL 76
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 33.9 bits (74), Expect = 0.094
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
Frame = +2
Query: 149 REILTLQFGHYSNYVGAHFWNI--QELSFDYSG--TATTDLNHD---ILYREGQTSRNEV 307
REIL +Q G N +GA FW + E D +G T +DL + + Y E R
Sbjct: 2 REILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQLERINVYYNEASCGR--- 58
Query: 308 TYTPRLLIADLK-GALKTL 361
+ PR ++ DL+ G + +L
Sbjct: 59 -FVPRAVLMDLEPGTMDSL 76
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 33.9 bits (74), Expect = 0.094
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Frame = +2
Query: 149 REILTLQFGHYSNYVGAHFWNIQELSFDYSGTATTDLNHDILYREGQTSRNEVT---YTP 319
REIL +Q G N +GA FW + T +D+ NE + + P
Sbjct: 2 REILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDLQLERVNVYYNEASCGRFVP 61
Query: 320 RLLIADLKGALKTLPQSG 373
R ++ DL+ +SG
Sbjct: 62 RAVLMDLEPGTMDSVRSG 79
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 33.9 bits (74), Expect = 0.094
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = +2
Query: 149 REILTLQFGHYSNYVGAHFWNI--QELSFDYSGTATTDLNHDILYREGQTSRNEVT---Y 313
REIL +Q G N +GA FW + E D +G + D D+ NE + Y
Sbjct: 2 REILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDT--DLQLERINVYFNEASGGKY 59
Query: 314 TPRLLIADLK-GALKTL 361
PR ++ DL+ G + +L
Sbjct: 60 VPRAVLMDLEPGTMDSL 76
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 33.9 bits (74), Expect = 0.094
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Frame = +2
Query: 149 REILTLQFGHYSNYVGAHFWNIQELSFD------YSGTATTDLNH-DILYREGQTSRNEV 307
REIL +Q G N +G+ FW + L Y G + L ++ Y E R
Sbjct: 2 REILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSELQLERVNVYYNEASCGR--- 58
Query: 308 TYTPRLLIADLKGALKTLPQSG 373
Y PR ++ DL+ +SG
Sbjct: 59 -YVPRAVLMDLEPGTMDSVRSG 79
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 33.5 bits (73), Expect = 0.12
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Frame = +2
Query: 149 REILTLQFGHYSNYVGAHFWNI--QELSFDYSGTATTDL-----NHDILYREGQTSRNEV 307
REIL +Q G N +GA FW + E D++G D D+ + E +
Sbjct: 2 REILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPLQLERIDVYFNEASGGK--- 58
Query: 308 TYTPRLLIADLK-GALKTL 361
Y PR ++ DL+ G + +L
Sbjct: 59 -YVPRAVLMDLEPGTMDSL 76
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 33.5 bits (73), Expect = 0.12
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Frame = +2
Query: 149 REILTLQFGHYSNYVGAHFWNI--QELSFD----YSGTATTDLNH-DILYREGQTSRNEV 307
REIL +Q G N +G+ FW + E D Y G + L ++ Y E R
Sbjct: 2 REILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYVGNSDLQLERVNVYYNEASCGR--- 58
Query: 308 TYTPRLLIADLK 343
Y PR ++ DL+
Sbjct: 59 -YVPRAILMDLE 69
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 32.3 bits (70), Expect = 0.29
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = +2
Query: 149 REILTLQFGHYSNYVGAHFWNI--QELSFDYSGTATTDLNHDILYREGQTSRNEVT---Y 313
REIL +Q G N +G+ FW + E D +G D + D+ NE + Y
Sbjct: 2 REILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD-SADLQLERINVYYNEASGGRY 60
Query: 314 TPRLLIADLKGALKTLPQSG 373
PR ++ DL+ +SG
Sbjct: 61 VPRAVLMDLEPGTMDSIRSG 80
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 31.5 bits (68), Expect = 0.50
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +2
Query: 149 REILTLQFGHYSNYVGAHFWNIQELSFDYSGTATTDLNHDILYREGQT------SRNEVT 310
REI+TLQ G N +G FW ++L ++ G + + D + G ++
Sbjct: 3 REIITLQVGQCGNQIGMEFW--KQLCLEH-GISKDGILEDFATQGGDRKDVFFYQADDQH 59
Query: 311 YTPRLLIADLK 343
Y PR L+ DL+
Sbjct: 60 YIPRALLIDLE 70
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 31.5 bits (68), Expect = 0.50
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +2
Query: 149 REILTLQFGHYSNYVGAHFWNIQELSFDYSGTATTDLNHDILYREGQT------SRNEVT 310
REI+TLQ G N +G FW ++L ++ G + + D + G ++
Sbjct: 3 REIITLQVGQCGNQIGMEFW--KQLCLEH-GISKDGILEDFATQGGDRKDVFFYQADDQH 59
Query: 311 YTPRLLIADLK 343
Y PR L+ DL+
Sbjct: 60 YIPRALLIDLE 70
>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 871
Score = 28.7 bits (61), Expect = 3.5
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Frame = +2
Query: 20 ICSYSYKQILNRAPTCYRKTKIFNEE*HTKNCS-CI*FNLKMSTREILTLQFGHYSNYVG 196
+CS+S K ILN + + I + S C +L TR L F S
Sbjct: 22 LCSWSLKDILNEDLSKEKIMTIPDRFSSVDEYSQCFVPHLLEETRTELFSSFRSLSKSPV 81
Query: 197 AHFWNIQELSFDYSGTATTDLNHDILYREGQTSRNEVTYTPR 322
+ +++ +YSG ++ HDI + +NE+ Y P+
Sbjct: 82 SRILSVETKVIEYSGRSSIKWFHDIKLMDYADDKNEI-YEPK 122
>At3g01100.1 68416.m00015 early-responsive to dehydration
protein-related / ERD protein-related low similarity to
ERD4 protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 703
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +3
Query: 165 YSLVTIQIMLVPIFGIYKSSVLITVVLQLPI*ITIFYTERVKRR 296
+SLV + I+ V +FG+ + V ++ + LP+ +T+ ++ +RR
Sbjct: 608 FSLVLMHIIAVGLFGLKELPVASSLTIPLPV-LTVLFSIYCQRR 650
>At4g29060.1 68417.m04157 elongation factor Ts family protein
similar to SP|P35019 Elongation factor Ts (EF-Ts)
{Galdieria sulphuraria}; contains Pfam profiles PF00627:
UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
S1 RNA binding domain
Length = 953
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 640 SGIDVKSFLITSVLILIYYIHSSRMKTRIQVICPSDYI 527
S D KS + S + YIH SR+ I+V C +D++
Sbjct: 800 SSADKKSSRLASEGRIGSYIHDSRIGVLIEVNCETDFV 837
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,409,506
Number of Sequences: 28952
Number of extensions: 266796
Number of successful extensions: 579
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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