Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_H02
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 179 4e-46
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 53 4e-08
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 42 6e-05
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.1
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 26 5.5
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 5.5
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 5.5
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 7.2
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 9.5
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 9.5
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 179 bits (435), Expect = 4e-46
Identities = 88/166 (53%), Positives = 109/166 (65%), Gaps = 1/166 (0%)
Frame = +2
Query: 158 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 337
NPLF RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLD
Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83
Query: 338 KTTAKGLFKILEKYRP-XXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 514
K TA +FK+L KYRP +P ++ G N V L+
Sbjct: 84 KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143
Query: 515 DXNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 652
+ KA LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG +
Sbjct: 144 EAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTV 189
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 52.8 bits (121), Expect = 4e-08
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +2
Query: 479 IRSGTNTVTKLVDXNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 646
+R G N TK ++ + +V+A D +PIE++L LP LC VPY V K+ LG
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 42.3 bits (95), Expect = 6e-05
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +2
Query: 479 IRSGTNTVTKLVDXNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 646
I G V K V + LV++A D+ P++++ +P LC VPY K LG
Sbjct: 54 ILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLG 109
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +1
Query: 193 YWSGHSANS*LVQICKMAQVYPHPAPEGCTSASSESAPSDQPIYPDTGQDYS 348
Y+ + N + Q+ A YP+ + SAS S+P+ P T + S
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTRSAFRPKTSETVS 347
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 454 LIFXGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 284
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 272 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 373
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 5.5
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = -2
Query: 500 LCLCRIGWC 474
LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 256 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 345
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +2
Query: 344 TAKGLFKILEKYR 382
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 482 RSGTNTVTKLVDXNKAXLVVIAHDVDPIELVLFLPALCRKM 604
+SG+ +T+ + +V I + +D +E LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,773
Number of Sequences: 5004
Number of extensions: 41945
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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