Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_H02
(654 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 200 8e-52
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 102 3e-22
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 54 8e-08
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 43 2e-04
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 33 0.27
SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_57776| Best HMM Match : EB (HMM E-Value=2.9) 29 4.4
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 200 bits (488), Expect = 8e-52
Identities = 93/163 (57%), Positives = 113/163 (69%)
Frame = +2
Query: 158 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 337
NPL EKRP+NF IG IQP RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD
Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88
Query: 338 KTTAKGLFKILEKYRPXXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVD 517
+ + LFK+L KYRP +P ++ G N +T LV+
Sbjct: 89 RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148
Query: 518 XNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 646
KA LVVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG
Sbjct: 149 NKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLG 191
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 102 bits (244), Expect = 3e-22
Identities = 49/97 (50%), Positives = 59/97 (60%)
Frame = +2
Query: 356 LFKILEKYRPXXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVDXNKAXL 535
LFK+L KYRP +P ++ G N +T LV+ KA L
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKAQL 63
Query: 536 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 646
VVIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG
Sbjct: 64 VVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLG 100
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 54.4 bits (125), Expect = 8e-08
Identities = 23/56 (41%), Positives = 34/56 (60%)
Frame = +2
Query: 479 IRSGTNTVTKLVDXNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 646
+R G N TK ++ A +V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 94 LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALG 149
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 467 RPNTIRSGTNTVTKLVDXNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 634
+ T+R G V K + + V++A DV PI+++ +P +C +PY V K
Sbjct: 95 KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 488 GTNTVTKLVDXNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 646
G + K +D +A L +++++ D V + ALC + G+P V +LG
Sbjct: 41 GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLG 93
>SB_46996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 227
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +1
Query: 151 DRESSLREEAKELCYWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 321
DR ++ E KE+CYW GH + + + + + + T+++SE S +P+
Sbjct: 137 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASTSEGGASAKPV 193
>SB_57776| Best HMM Match : EB (HMM E-Value=2.9)
Length = 669
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 151 DRESSLREEAKELCYWSGHSANS*LVQ-ICKMAQVYPHPAPEGCTSASSESAPSDQPI 321
DR ++ E KE+CYW GH + + + + + + T++ SE S +P+
Sbjct: 187 DRRKNMEERHKEMCYW-GHKFETYVTKLVSERGKRETVMGASTSTASKSEGGASAKPV 243
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 280 TSASSESAPSDQPIYPDTG 336
T+ASSE+APS P PD G
Sbjct: 43 TAASSEAAPSSAPSMPDYG 61
>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 832
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +2
Query: 227 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 376
SR RW Y R+ KA+LQR ++ I Q T + K +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,500,438
Number of Sequences: 59808
Number of extensions: 336805
Number of successful extensions: 862
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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