Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_H02
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 195 2e-50
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 194 3e-50
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 47 1e-05
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 47 1e-05
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 47 1e-05
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 45 5e-05
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 42 5e-04
At2g31760.1 68415.m03878 zinc finger protein-related contains lo... 32 0.29
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 2.7
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 29 2.7
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 29 2.7
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 28 4.7
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 28 4.7
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 28 4.7
At5g64930.1 68418.m08167 CPR5 protein, putative Constitutive exp... 27 8.2
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 195 bits (475), Expect = 2e-50
Identities = 95/165 (57%), Positives = 115/165 (69%)
Frame = +2
Query: 158 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 337
NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 79
Query: 338 KTTAKGLFKILEKYRPXXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVD 517
K A LFKIL KYRP +P ++ G N VT L++
Sbjct: 80 KNLATSLFKILLKYRP-EDKAAKKERLLNKAQAEAEGKPAESKKPIVVKYGLNHVTYLIE 138
Query: 518 XNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 652
NKA LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAV 183
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 194 bits (474), Expect = 3e-50
Identities = 94/165 (56%), Positives = 115/165 (69%)
Frame = +2
Query: 158 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 337
NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK +L++RLKVPP +NQFT+TLD
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80
Query: 338 KTTAKGLFKILEKYRPXXXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVD 517
K A LFK+L KYRP +P ++ G N VT L++
Sbjct: 81 KNLATSLFKVLLKYRP-EDKAAKKERLVKKAQAEAEGKPSESKKPIVVKYGLNHVTYLIE 139
Query: 518 XNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 652
NKA LVVIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAV 184
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +2
Query: 479 IRSGTNTVTKLVDXNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 646
++ G N TK ++ + VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/56 (37%), Positives = 31/56 (55%)
Frame = +2
Query: 479 IRSGTNTVTKLVDXNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 646
++ G N TK ++ + VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +2
Query: 479 IRSGTNTVTKLVDXNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 646
++ G N TK ++ + +V+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFIVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +2
Query: 479 IRSGTNTVTKLVDXNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 643
++ G V K + + L VIA ++ PI+++ LP LC + GVPY V K L
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDL 105
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +2
Query: 497 TVTKLVDXNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 646
+ TK ++ + VV+A D +P+E++L LP L VPY V K LG
Sbjct: 73 SATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 122
>At2g31760.1 68415.m03878 zinc finger protein-related contains low
similarity to zinc finger proteins and Pfam PF01485: IBR
domain
Length = 514
Score = 32.3 bits (70), Expect = 0.29
Identities = 18/40 (45%), Positives = 23/40 (57%)
Frame = -3
Query: 610 YTHFTA*RWQEENQLNRINIMSDDHKXRLVXVDQLGDCVC 491
YTH+ RW E NQ +R+ MSD K + V + QL D C
Sbjct: 340 YTHYYV-RWVE-NQSSRLKAMSDLEKFQSVQLKQLSDNQC 377
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -3
Query: 484 SDGVGPLWWRLIFXGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 326
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 488 GTNTVTKLVDXNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 646
G + KL++ A LVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 488 GTNTVTKLVDXNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 646
G + KL++ A LVV+A D + + V + ALC V V LG
Sbjct: 47 GLHECAKLIEKRVAQLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLG 99
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 488 GTNTVTKLVDXNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 646
G + KL++ A L V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 488 GTNTVTKLVDXNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 646
G + KL++ A L V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 488 GTNTVTKLVDXNKAXLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 646
G + KL++ A L V+A D + + V + ALC + V LG
Sbjct: 47 GLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLG 99
>At5g64930.1 68418.m08167 CPR5 protein, putative Constitutive
expressor of Pathogensis Related genes 5 (cpr5);
regulator of disease resistance and senescence (Plant J.
(2001)26(4)409-420.
Length = 564
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/55 (29%), Positives = 21/55 (38%)
Frame = -1
Query: 186 FFGLFSKRGFTIFLGSTFLTTNGAAATFFPTFXLGFFCTIVEQLLIQRFKGHEKI 22
FFG+ FT FL T F LG FC + +L + G K+
Sbjct: 418 FFGVLMIIVFTYFLNKRSSGTKQTMPISFIVLFLGIFCGVSGKLCVDTLGGDGKL 472
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,871,533
Number of Sequences: 28952
Number of extensions: 236285
Number of successful extensions: 677
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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