Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_G24
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0082 + 12059692-12060209,12060484-12060973 33 0.15
03_02_0296 + 7191455-7191615,7192031-7192071,7192156-7192741,719... 29 4.2
10_01_0158 + 1798370-1798381,1798472-1798840,1799031-1799564 28 5.6
10_01_0062 - 818396-818538,819482-819693,819936-820420,820540-82... 28 5.6
08_01_0409 + 3625071-3625228,3625829-3625905,3626310-3626889,362... 28 5.6
03_02_0270 - 7011363-7012302,7013237-7013640,7014264-7014333,701... 28 5.6
02_03_0020 - 13996688-13996785,13997168-13997217,13997516-139976... 28 5.6
08_02_0644 - 19658270-19658626,19659142-19659218,19659256-196594... 27 9.8
07_03_1782 + 29477748-29478169,29478257-29478413,29478518-294786... 27 9.8
04_03_0174 + 12263843-12265126 27 9.8
>08_02_0082 + 12059692-12060209,12060484-12060973
Length = 335
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 312 RRHFPGYTFTEHHKAWCGNICMG 380
RRH P TF+E H+A+C ICMG
Sbjct: 188 RRH-PDLTFSEVHEAFCNGICMG 209
>03_02_0296 +
7191455-7191615,7192031-7192071,7192156-7192741,
7193307-7193444,7193572-7193728,7193848-7194332,
7194867-7195086
Length = 595
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 419 WVSIISQCATLIFVTDXKNTILWEPLPWHDLVKF 520
W SII+ C T++ +T TIL L +D VK+
Sbjct: 232 WFSIINSCVTVLLLTGFLATILMRVLK-NDFVKY 264
>10_01_0158 + 1798370-1798381,1798472-1798840,1799031-1799564
Length = 304
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 385 VFLVVALVVAGMGFYYFSMCYPYFCHRQXK 474
+FLV L +A Y C+PY HR K
Sbjct: 121 LFLVYELDIANALLYLHEECHPYILHRDIK 150
>10_01_0062 -
818396-818538,819482-819693,819936-820420,820540-820696,
820787-820924,821127-821703,821978-822018,822679-822809
Length = 627
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 419 WVSIISQCATLIFVTDXKNTILWEPLPWHDLVKF 520
W SI++ C T++ +T TIL L +D VK+
Sbjct: 219 WFSIVNSCVTVLLLTGFLATILMRVLK-NDFVKY 251
>08_01_0409 +
3625071-3625228,3625829-3625905,3626310-3626889,
3626974-3627111,3627318-3627387,3627449-3627933,
3628681-3628890,3629259-3629326,3629855-3629961,
3630275-3630346,3630448-3630614,3630709-3630820,
3631464-3631650,3632174-3632286
Length = 847
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 419 WVSIISQCATLIFVTDXKNTILWEPLPWHDLVKF 520
W SII+ C T++ +T TIL L +D +K+
Sbjct: 241 WFSIINSCVTVLLLTGFLATILMRVLK-NDFIKY 273
>03_02_0270 -
7011363-7012302,7013237-7013640,7014264-7014333,
7014835-7015331,7015959-7016283,7018060-7018292
Length = 822
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 427 YYFSMCYPYFCHRQXK-YHIMGTPTMA 504
YY MCYP+FC+ I+G T+A
Sbjct: 262 YYSFMCYPFFCNLYLSCITILGVATIA 288
>02_03_0020 -
13996688-13996785,13997168-13997217,13997516-13997619,
13997664-13997764,13998436-13998505,13998604-13999422,
14000894-14001052
Length = 466
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 419 IPATTSATTKNTIPHADIPTPRLVVLCEGIPGEVPPY 309
I T+ N +P+ D+P +LV + + +PG+ P Y
Sbjct: 313 ISTTSLCEDHNHLPN-DVPLVKLVTINKALPGDTPDY 348
>08_02_0644 -
19658270-19658626,19659142-19659218,19659256-19659430,
19659543-19659596,19659691-19659858,19660756-19660953,
19661546-19661632,19661739-19661827,19662499-19662955
Length = 553
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 294 REG*TVRRHFPGYTFTEHHKAWCGN-ICMGNCVLSRGTGSG 413
RE T R +T ++HK C N +C G +LSR T G
Sbjct: 338 RESDTQTRLVTYWTADDYHKTGCMNMLCPGFVLLSRTTSPG 378
>07_03_1782 +
29477748-29478169,29478257-29478413,29478518-29478610,
29478753-29478938,29479107-29479187,29479788-29479925,
29480044-29480208
Length = 413
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = -1
Query: 416 PATTSATTKNTIPHADIPTPRLVVLCEGI-PGEVPPYGLAFPRALVP 279
P + AT + + P P CE PG PP+GLA RA +P
Sbjct: 40 PTSRVATVEEDDNENNAPPPP----CEDFDPGAAPPFGLADIRAAIP 82
>04_03_0174 + 12263843-12265126
Length = 427
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/42 (33%), Positives = 17/42 (40%)
Frame = -1
Query: 380 PHADIPTPRLVVLCEGIPGEVPPYGLAFPRALVPTTVFTISS 255
PH P L VL G PP L PR+ ++ T S
Sbjct: 123 PHRTASAPSLPVLVSGSASAAPPVTLGLPRSASSPSLATSGS 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,738,201
Number of Sequences: 37544
Number of extensions: 353426
Number of successful extensions: 843
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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