Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G24
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032627-8|CAB63354.2|  373|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium chann...    28   6.6  

>AL032627-8|CAB63354.2|  373|Caenorhabditis elegans Hypothetical
           protein Y41C4A.5 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +3

Query: 225 AGCDALRSSNRGNSKYGSGNQGSREG*TVRRHFPGYTFTEHHKAWCGNICMGNCVLSRGT 404
           +G  +  +++ GNS YGS N GS  G +   +        ++    GN   GN   + G 
Sbjct: 206 SGNSSNNNNSSGNSNYGSNNSGSGNGNSNSGNGNSGNGNGNNAGNSGN-GNGNSNGNNGN 264

Query: 405 GSGRNG 422
           GS  NG
Sbjct: 265 GSNGNG 270


>AF000198-6|AAB53056.2|  526|Caenorhabditis elegans Calcium channel,
           beta subunit protein1 protein.
          Length = 526

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -3

Query: 255 DLSYAKRRILQYDLKQGQLKTSKSLVSSFLSGVYRSINQLFXICKT 118
           D+S AKR +L    K+  ++ + S  S+ L+ +   I ++F + ++
Sbjct: 242 DISLAKRSLLNNPNKRAMMERANSRTSNSLAEIQTEIERIFELARS 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,804,197
Number of Sequences: 27780
Number of extensions: 316048
Number of successful extensions: 902
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)