Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G24
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    24   1.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    24   1.5  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   4.5  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   4.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.8  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.8  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 421 PFLPLPVPRLRTQFPMQIFPHHALWCSVKVYPGKC 317
           PF   P+  LR + P+ I P H +  +  V P  C
Sbjct: 66  PFAKPPIGPLRFRKPLPIEPWHGV-LNATVLPNSC 99


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 421 PFLPLPVPRLRTQFPMQIFPHHALWCSVKVYPGKC 317
           PF   P+  LR + P+ I P H +  +  V P  C
Sbjct: 66  PFAKPPIGPLRFRKPLPIEPWHGV-LNATVLPNSC 99


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 100 FKKYTK-YNSXKIYNTLLNV 44
           +K Y   YNS K+Y  ++N+
Sbjct: 311 YKNYNNNYNSKKLYYNIINI 330


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 100 FKKYTK-YNSXKIYNTLLNV 44
           +K Y   YNS K+Y  ++N+
Sbjct: 322 YKNYNNNYNSKKLYYNIINI 341


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -2

Query: 427 RNPFLPLPVPRLRTQFPMQIFPHHALWCSVKVYPGKCLRTV 305
           + PF P   P +     +  FP   +W +  +Y  K +R +
Sbjct: 288 QKPFYPGYYPTMTYSNGLP-FPQRPIWSNFPIYKYKYIREI 327


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -2

Query: 427 RNPFLPLPVPRLRTQFPMQIFPHHALWCSVKVYPGKCLRTV 305
           + PF P   P +     +  FP   +W +  +Y  K +R +
Sbjct: 288 QKPFYPGYYPTMTYSNGLP-FPQRPIWSNFPIYKYKYIREI 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,119
Number of Sequences: 438
Number of extensions: 4538
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)