Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G24
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related...    30   1.2  
At5g37310.1 68418.m04481 endomembrane protein 70, putative multi...    29   3.5  
At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein le...    28   4.7  
At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein ...    28   6.2  
At2g01970.1 68415.m00132 endomembrane protein 70, putative             27   8.2  
At1g14670.1 68414.m01744 endomembrane protein 70, putative simil...    27   8.2  

>At5g54340.1 68418.m06767 zinc finger (C2H2 type) protein-related
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 244

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 451 KGSTLRNNRNPFLPLPVPRLRTQFPMQIFPHHAL 350
           +GS+  NN NP L + VPR  T   M  +  HAL
Sbjct: 119 EGSSSSNNVNPLLNVGVPRGTTDMNMNNYSSHAL 152


>At5g37310.1 68418.m04481 endomembrane protein 70, putative
           multispanning membrane protein, Homo sapiens,
           EMBL:HSU94831
          Length = 564

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 419 WVSIISQCATLIFVTDXKNTILWEPLPWHDLVKF 520
           W SII+ C T++ +T    TIL   L  +D VK+
Sbjct: 230 WFSIINSCVTVLLLTGFLATILMRVLK-NDFVKY 262


>At5g13150.1 68418.m01506 exocyst subunit EXO70 family protein
           leucine zipper-containing protein - Lycopersicon
           esculentum, EMBL:Z12127 contains Pfam domain PF03081:
           Exo70 exocyst complex subunit;
          Length = 653

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 350 QGVVWEYLHGELCS*SWHW*WQEWVSIISQCATLIF 457
           Q + WE L GE+ S         W+SI+ +C+T++F
Sbjct: 261 QRIGWESLEGEIAS---------WISIVRRCSTVLF 287


>At1g30970.1 68414.m03792 zinc finger (C2H2 type) family protein
           contains Pfam domain PF00096: Zinc finger, C2H2 type
          Length = 367

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/43 (25%), Positives = 17/43 (39%)
 Frame = -1

Query: 422 PIPATTSATTKNTIPHADIPTPRLVVLCEGIPGEVPPYGLAFP 294
           P+   T      + P   +P P   V+   IP + PP+    P
Sbjct: 210 PVTGVTPPGIPTSSPAMPVPQPLFPVVNNSIPSQAPPFSAPLP 252


>At2g01970.1 68415.m00132 endomembrane protein 70, putative
          Length = 592

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 419 WVSIISQCATLIFVTDXKNTILWEPLPWHDLVKF 520
           W SII+ C T++ +T    TIL   L  +D +K+
Sbjct: 229 WFSIINSCVTVLLLTGFLATILMRVLK-NDFMKY 261


>At1g14670.1 68414.m01744 endomembrane protein 70, putative similar
           to endomembrane protein emp70 precursor isolog
           GB:AAF67014 GI:7677068 (Homo sapiens)
          Length = 592

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 419 WVSIISQCATLIFVTDXKNTILWEPLPWHDLVKF 520
           W SII+ C T++ +T    TIL   L  +D +K+
Sbjct: 229 WFSIINSCVTVLLLTGFLATILMRVLK-NDFMKY 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,607,644
Number of Sequences: 28952
Number of extensions: 282498
Number of successful extensions: 641
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)