Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_G23
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0075 - 522554-522616,522742-522748,523033-523136,523237-52... 32 0.23
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650... 32 0.30
02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665 31 0.53
04_01_0180 + 2034021-2034023,2034741-2035088 31 0.69
12_01_0795 - 7288235-7288300,7288367-7288443,7288789-7290760 29 2.8
11_04_0097 + 13448740-13450725 28 4.9
03_05_0842 + 28110940-28111141,28111451-28111879,28112034-281128... 28 4.9
03_06_0040 + 31240164-31241102,31241280-31241897 27 6.5
03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401 27 6.5
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806... 27 6.5
10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878 27 8.6
>02_01_0075 -
522554-522616,522742-522748,523033-523136,523237-523368,
525209-525401,525978-526330,526693-526791,526864-526935,
527062-527213,527338-527386,527755-527885,528067-528307,
528392-528565,528656-528797,529236-529282,529370-529450,
530170-530271,530345-530440,531437-531444,531575-531616,
531830-531894,534761-534853,534888-534959,535303-535509,
536318-537226,537503-538158
Length = 1429
Score = 32.3 bits (70), Expect = 0.23
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +2
Query: 299 AALGDANGKAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESXKL 478
AA+ DA G+ +A+E ++ E+L A+PDVE L E L+ A ++ ++ L
Sbjct: 514 AAIYDAMGRVEDAIEILEHVLKVREEKLGTANPDVEDEKLRLAELLKEAGRSRNRKQKSL 573
Query: 479 AKKVSSN 499
+N
Sbjct: 574 ENLFVTN 580
>05_03_0415 -
13661745-13664240,13664376-13664401,13665018-13665035,
13665914-13666181,13666531-13666598,13667102-13667243
Length = 1005
Score = 31.9 bits (69), Expect = 0.30
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = -2
Query: 371 PCARCSASTVPKPXWPCRSRLRALHWRLLAKALSCCSTDSEPSFQALLKSCAS 213
P R SA T+ WP L A+ +R L AL+CC + S PS L++C S
Sbjct: 99 PGLRASAPTL---RWPFPRLLDAIAFRPLPCALACCGS-SAPSVVRHLRACGS 147
>02_05_0471 - 29306334-29306398,29306579-29306775,29307744-29309665
Length = 727
Score = 31.1 bits (67), Expect = 0.53
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +2
Query: 311 DANGKAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESXKLAKKV 490
DA G+ EA+E + E+L A+PDV+ L E L+ A + +++ L +
Sbjct: 637 DAMGRLDEAIEILEHVVGMREEKLGTANPDVDDEKRRLAELLKEAGRGRSRKAKSLENLL 696
Query: 491 SSN 499
+N
Sbjct: 697 ETN 699
>04_01_0180 + 2034021-2034023,2034741-2035088
Length = 116
Score = 30.7 bits (66), Expect = 0.69
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +2
Query: 332 EALEQSRQNIERTAEELRKAHPDVEKNATALREK---LQAAVQN 454
EALE+ QN+ R EE +K H +++K L K L AA +N
Sbjct: 52 EALERQVQNLTRYKEEKQKQHANLQKEFAELERKYRDLDAAHRN 95
>12_01_0795 - 7288235-7288300,7288367-7288443,7288789-7290760
Length = 704
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/54 (31%), Positives = 22/54 (40%)
Frame = -2
Query: 389 PCGAPRPCARCSASTVPKPXWPCRSRLRALHWRLLAKALSCCSTDSEPSFQALL 228
P P P +A+ +P+P W L H LL+ SC S ALL
Sbjct: 6 PVPLPNPAGSAAAAVLPRPAWNTNRNLVVTH-PLLSLLESCASFRRLLQLHALL 58
>11_04_0097 + 13448740-13450725
Length = 661
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 383 GAPRPCARCSASTVPKPXWPCRSRLRALHWRLLA 282
GAPRP + +A +P+P + LH R+LA
Sbjct: 78 GAPRPASNPNAPKLPEPASALSGKRLDLHRRILA 111
>03_05_0842 +
28110940-28111141,28111451-28111879,28112034-28112806,
28114046-28114237,28115116-28115277,28115395-28115861,
28116339-28116384,28116639-28116647
Length = 759
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 3 LQSRFASPSALSLSTAHHGRQVRSSLRLHR-SGPRSDGATRRSRLL 137
L S +S S+L+LS RQV+++L+ HR +G R +R+L
Sbjct: 36 LTSSSSSTSSLTLSPPDFLRQVQAALKRHRPTGSMQSNQPRATRVL 81
>03_06_0040 + 31240164-31241102,31241280-31241897
Length = 518
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 91 ALAQGAMVRRDAPDFFKDIEHHTKEFHKTLEQQFNSLTKSKDAQDFSKA--WKD 246
A+AQ RR+APD D+ +E L+ + N L + + D+ A W D
Sbjct: 190 AIAQSKTTRREAPDADTDMSMEAQELRHVLD-ELNPLIGAANLWDYLPALRWFD 242
>03_05_0512 + 25069175-25070533,25072177-25072226,25072308-25072401
Length = 500
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 308 GDANGKAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQ 439
GD G+ A+ +R E A LR+A ++ A ALR +++
Sbjct: 47 GDGEGEGEGAVVLARVEAEEEAAALREAVAAAQETAAALRSEVE 90
>03_04_0034 +
16679624-16679940,16679980-16680199,16680319-16680624,
16680703-16681044,16681066-16681257,16681533-16681684,
16681803-16681974,16682017-16682338,16682414-16682862
Length = 823
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 299 AALGDANGKAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNT 457
AA+G G A A SR ++ R +L H D ++K + +NT
Sbjct: 141 AAVG-GGGAAVSARPASRASVRRNVSDLAAEHSDANDGIPVRKDKANWSARNT 192
>10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878
Length = 947
Score = 27.1 bits (57), Expect = 8.6
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +3
Query: 18 ASPSALSLSTAHHGRQVRSSLRLHRSGPRSDGATRRSRLLQGHRTPHQGVP 170
+SPS+ S S+ SS R R G + + A RR Q PH GVP
Sbjct: 743 SSPSS-SASSEDSSIAPDSSRRRQREGEKIEEAERRLMYHQSAPPPHIGVP 792
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,631,276
Number of Sequences: 37544
Number of extensions: 193907
Number of successful extensions: 902
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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