Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G23
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.2  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               22   4.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   7.3  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 114 HHRSLGQSDAGEENYELGGHDVL 46
           HH+    + AG +   L GH VL
Sbjct: 920 HHQIQVSTSAGLQTIRLSGHSVL 942


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +2

Query: 287 RVSSAALGDANGKAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQE 466
           +VS AAL     KA + +EQ  QN++   +     H  ++KNA    +K    +  ++Q+
Sbjct: 34  KVSWAALKKM--KAGD-MEQDDQNLKCYLKCFMTKHGILDKNAEVDVQKALRHLPRSMQD 90

Query: 467 SXK 475
           S K
Sbjct: 91  STK 93


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 251 EPSFQALLKSCASFDLVSELN 189
           EP    +  + ASFD +SE+N
Sbjct: 59  EPLLVGMDLTIASFDAISEVN 79


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 48  AHHGRQVRSSLRLHRSGPRSDGATRRSRLLQ 140
           A +G+   +   LHR+   S  +  +SRL++
Sbjct: 119 ASNGKIYANHCELHRAACHSGSSLTKSRLMR 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,935
Number of Sequences: 438
Number of extensions: 1766
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)