Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_G23
(504 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36640.1 68415.m04494 late embryogenesis abundant protein (EC... 31 0.33
At5g20440.1 68418.m02430 mob1/phocein family protein contains Pf... 30 0.77
At2g36070.1 68415.m04429 mitochondrial import inner membrane tra... 30 0.77
At4g34430.4 68417.m04893 DNA-binding family protein contains Pfa... 29 1.8
At4g34430.3 68417.m04892 DNA-binding family protein contains Pfa... 29 1.8
At4g34430.2 68417.m04891 DNA-binding family protein contains Pfa... 29 1.8
At4g34430.1 68417.m04890 DNA-binding family protein contains Pfa... 29 1.8
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:... 29 2.4
At3g50370.1 68416.m05508 expressed protein 28 3.1
At2g19950.1 68415.m02332 expressed protein contains 2 transmembr... 28 3.1
At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxida... 28 3.1
At5g46070.1 68418.m05665 guanylate-binding family protein contai... 28 4.1
At4g27595.1 68417.m03964 protein transport protein-related low s... 28 4.1
At3g58840.1 68416.m06558 expressed protein 28 4.1
At3g55050.2 68416.m06114 serine/threonine protein phosphatase 2C... 28 4.1
At3g55050.1 68416.m06113 serine/threonine protein phosphatase 2C... 28 4.1
At2g20510.1 68415.m02395 mitochondrial import inner membrane tra... 27 5.4
At5g51370.1 68418.m06369 F-box family protein similar to unknown... 27 7.2
At3g50180.1 68416.m05486 hypothetical protein 27 7.2
At3g09980.1 68416.m01198 expressed protein contains Pfam profile... 27 7.2
At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)... 27 7.2
At5g61920.1 68418.m07773 hypothetical protein 27 9.5
At5g53380.1 68418.m06633 hypothetical protein 27 9.5
At2g36410.2 68415.m04470 expressed protein contains Pfam profile... 27 9.5
At2g36410.1 68415.m04469 expressed protein contains Pfam profile... 27 9.5
At1g72100.1 68414.m08334 late embryogenesis abundant domain-cont... 27 9.5
>At2g36640.1 68415.m04494 late embryogenesis abundant protein
(ECP63) / LEA protein nearly identical to to LEA protein
in group 3 [Arabidopsis thaliana] GI:1526424; contains
Pfam profile PF02987: Late embryogenesis abundant
protein
Length = 448
Score = 31.5 bits (68), Expect = 0.33
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2
Query: 311 DANGKAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQES 469
+A GKA E + +++N+E+ E R+ ++ L+E+ A Q Q++
Sbjct: 284 EAKGKAVETKDTAKENMEKAGEVTRQKMEEMRLEGKELKEEAGAKAQEASQKT 336
>At5g20440.1 68418.m02430 mob1/phocein family protein contains Pfam
profile: PF03637 mob1/phocein family
Length = 217
Score = 30.3 bits (65), Expect = 0.77
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +2
Query: 347 SRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESXKLAKKVSSN 499
S N+ RT ++ HP+ + + +RE + + ++E+ +L + V N
Sbjct: 9 SSNNVVRTVPSKKRKHPEYKSKGSQIRELISGIRSDNLREAVRLPQGVDIN 59
>At2g36070.1 68415.m04429 mitochondrial import inner membrane
translocase subunit TIM44, putative contains similarity
to Swiss-Prot:O35857 import inner membrane translocase
subunit TIM44, mitochondrial precursor [Mus musculus];
contains Pfam domian PF04280: Mitochondrial import inner
membrane, translocase subunit TIM44
Length = 469
Score = 30.3 bits (65), Expect = 0.77
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +2
Query: 341 EQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESXKLAKKVSSNV 502
+++ + + AEEL+ D++ EKL Q E+ +AKKVSS+V
Sbjct: 66 QKTVKEFKERAEELQGVKEDLKVRTKQTTEKLYKQGQGVWTEAESVAKKVSSSV 119
>At4g34430.4 68417.m04893 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 986
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 305 LGDANGKAXEALEQSRQNIERTAEELRK--AHPDVEKNATALREKLQAAVQNTVQESXKL 478
L D N + E + S+ + ++A + + A DVE T EK V TV E +L
Sbjct: 712 LKDGNKLSSENKDASQSTVSQSAADASQPEASRDVEMKDTLQSEKDPEDVVKTVGEKVQL 771
Query: 479 AKKVSSN 499
AK+ +N
Sbjct: 772 AKEEGAN 778
>At4g34430.3 68417.m04892 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 983
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 305 LGDANGKAXEALEQSRQNIERTAEELRK--AHPDVEKNATALREKLQAAVQNTVQESXKL 478
L D N + E + S+ + ++A + + A DVE T EK V TV E +L
Sbjct: 710 LKDGNKLSSENKDASQSTVSQSAADASQPEASRDVEMKDTLQSEKDPEDVVKTVGEKVQL 769
Query: 479 AKKVSSN 499
AK+ +N
Sbjct: 770 AKEEGAN 776
>At4g34430.2 68417.m04891 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 305 LGDANGKAXEALEQSRQNIERTAEELRK--AHPDVEKNATALREKLQAAVQNTVQESXKL 478
L D N + E + S+ + ++A + + A DVE T EK V TV E +L
Sbjct: 712 LKDGNKLSSENKDASQSTVSQSAADASQPEASRDVEMKDTLQSEKDPEDVVKTVGEKVQL 771
Query: 479 AKKVSSN 499
AK+ +N
Sbjct: 772 AKEEGAN 778
>At4g34430.1 68417.m04890 DNA-binding family protein contains Pfam
domains PF04433: SWIRM domain, PF00249: Myb-like
DNA-binding domain and PF00569: Zinc finger, ZZ type
Length = 985
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 305 LGDANGKAXEALEQSRQNIERTAEELRK--AHPDVEKNATALREKLQAAVQNTVQESXKL 478
L D N + E + S+ + ++A + + A DVE T EK V TV E +L
Sbjct: 712 LKDGNKLSSENKDASQSTVSQSAADASQPEASRDVEMKDTLQSEKDPEDVVKTVGEKVQL 771
Query: 479 AKKVSSN 499
AK+ +N
Sbjct: 772 AKEEGAN 778
>At5g20490.1 68418.m02435 myosin, putative similar to myosin
(GI:433663) [Arabidopsis thaliana]; myosin-like protein
my5, common sunflower, PIR:T14279
Length = 1545
Score = 28.7 bits (61), Expect = 2.4
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +2
Query: 332 EALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQ--ES-XKLAKKVSSN 499
EAL+ S Q + AE LRKA + E + L +L+ A + Q ES +L +K+S++
Sbjct: 997 EALKASLQAERQAAENLRKAFSEAEARNSELATELENATRKADQLHESVQRLEEKLSNS 1055
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +2
Query: 341 EQSRQNIERTAEELRKAHPDVEKNATALRE--KLQAAVQNTVQESXKLAKK 487
EQ R R AEELRK+ + EK+ + E + QAA Q ++ K++++
Sbjct: 531 EQERLEATRRAEELRKSKEE-EKHRLFMEEERRKQAAKQKLLELEEKISRR 580
>At2g19950.1 68415.m02332 expressed protein contains 2 transmembrane
domains; weak similarity to HPSR2 - heavy chain
potential motor protein (GI:871048) [Giardia
intestinalis]
Length = 702
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 293 SSAALGDANGKAXEALEQSRQNIERTAEELRKAHPDVEKNATALREK 433
+ AAL + + +AL + ER AEE R AH + K A RE+
Sbjct: 368 NQAALNEGKLSSLQALREELATTERRAEEERSAH-NATKMAAMERER 413
>At1g62380.1 68414.m07038 1-aminocyclopropane-1-carboxylate oxidase,
putative / ACC oxidase, putative nearly identical to ACC
oxidase (ACC ox1) GI:587086 from [Brassica oleracea]
Length = 320
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 130 DFFKDIEHHTKEFHKTL-EQQFNSLTKSKDAQDFSKAWKD 246
D IE TK+ +KT EQ+FN + KSK + +D
Sbjct: 47 DLMDKIEKMTKDHYKTCQEQKFNDMLKSKGLDNLETEVED 86
>At5g46070.1 68418.m05665 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 1060
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +2
Query: 353 QNIERTAEELRKAHPDVEKNATALREKLQAA---VQNTVQE 466
+++E+ +E RKAH + A AL +LQAA V N QE
Sbjct: 876 KSLEKLLDEERKAHIAANRRAEALSLELQAAQAHVDNLQQE 916
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 27.9 bits (59), Expect = 4.1
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +2
Query: 290 VSSAALGDANGKAXEAL---EQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTV 460
VSS D K E+L E QNI + AEELR D K E+L AA ++ V
Sbjct: 640 VSSIDKIDQLSKVKESLVDKETKLQNIIQEAEELRVKEIDYLKKI----EELSAAKESLV 695
Query: 461 QESXKLAKKV 490
++ KL V
Sbjct: 696 EKETKLLSTV 705
>At3g58840.1 68416.m06558 expressed protein
Length = 318
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +2
Query: 323 KAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESXK 475
KA + + + E+ AE LRK +VEK L K+ ++E K
Sbjct: 128 KALAEIVEKLEGCEKEAEGLRKDRAEVEKRVRDLERKIGVLEVREMEEKSK 178
>At3g55050.2 68416.m06114 serine/threonine protein phosphatase 2C
(PP2C6) identical to Ser/Thr protein phosphatase 2C
(PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to
protein phosphatase 2C (GI:3608412) [Mesembryanthemum
crystallinum]; contains Pfam PF00481 : Protein
phosphatase 2C domain; contains TIGRFAM TIGR01573 :
CRISPR-associated protein Cas2
Length = 384
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 323 KAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESXKL 478
KA + + +IE EELR HPD + N L+ K+ V+ +Q S +
Sbjct: 188 KAVQLSTEHNASIESVREELRLLHPD-DPNIVVLKHKVW-RVKGIIQVSRSI 237
>At3g55050.1 68416.m06113 serine/threonine protein phosphatase 2C
(PP2C6) identical to Ser/Thr protein phosphatase 2C
(PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to
protein phosphatase 2C (GI:3608412) [Mesembryanthemum
crystallinum]; contains Pfam PF00481 : Protein
phosphatase 2C domain; contains TIGRFAM TIGR01573 :
CRISPR-associated protein Cas2
Length = 384
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2
Query: 323 KAXEALEQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESXKL 478
KA + + +IE EELR HPD + N L+ K+ V+ +Q S +
Sbjct: 188 KAVQLSTEHNASIESVREELRLLHPD-DPNIVVLKHKVW-RVKGIIQVSRSI 237
>At2g20510.1 68415.m02395 mitochondrial import inner membrane
translocase subunit TIM44, putative contains similarity
to Swiss-Prot:O35857 import inner membrane translocase
subunit TIM44, mitochondrial precursor [Mus musculus];
contains Pfam domian PF04280: Mitochondrial import inner
membrane, translocase subunit TIM44
Length = 472
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +2
Query: 341 EQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQNTVQESXKLAKKVSSNV 502
E++ + ++ EE + D++ EKL E+ AKKVSS+V
Sbjct: 66 ERTVKELKERTEEFKGVTEDLKVRTKQTTEKLYKQADGVWTEAESAAKKVSSSV 119
>At5g51370.1 68418.m06369 F-box family protein similar to unknown
protein (emb|CAB82288.1) ; similar to SKP1 interacting
partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 355
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 272 SCCSTDSEPSFQALLKSCASFDLVSELNCC 183
SC D+ P + LL+SC + + + CC
Sbjct: 286 SCRKIDASPGPEKLLRSCPAMESLQLKRCC 315
>At3g50180.1 68416.m05486 hypothetical protein
Length = 588
Score = 27.1 bits (57), Expect = 7.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 24 PSALSLSTAHHGRQVRSSLRLHR 92
P +SL HHGRQ S+ H+
Sbjct: 197 PQTVSLGPYHHGRQQTQSMECHK 219
>At3g09980.1 68416.m01198 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 178
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 338 LEQSRQNIERTA-EELRKAHPDVEKNATALREKLQAAVQNTVQESXKLA 481
+ + + + RTA R ++EK +RE++QA + +E+ +LA
Sbjct: 38 MSKEDEEMSRTALSAFRAKEEEIEKKKMEIRERVQAQLGRVEEETKRLA 86
>At1g09080.1 68414.m01013 luminal binding protein 3 (BiP-3) (BP3)
Similar to Arabidopsis luminal binding protein
(gb|D89342); contains Pfam domain PF00012: dnaK protein
Length = 678
Score = 27.1 bits (57), Expect = 7.2
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 341 EQSRQNIERTAEELRKAHPDVEKNATALREKLQAAVQN---TVQESXKLAKKVS 493
E+ + + R AEE + +++ A R KL+ V N TV + KLAKK+S
Sbjct: 557 EEEIEEMIREAEEFAEEDKIMKEKIDA-RNKLETYVYNMKSTVADKEKLAKKIS 609
>At5g61920.1 68418.m07773 hypothetical protein
Length = 238
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 332 EALEQSRQNIERTAEELRKAHPDVEKNATALREKLQ--AAVQNTVQESXKLAKKVSSNV 502
E+LE S Q +ER EE ++ + E+ + EKL ++ + + K +K+ S +
Sbjct: 170 ESLEASSQELERLKEEHQRLRKEFEEEKSGNVEKLAQLKGMERKIIGAVKAIEKLRSEI 228
>At5g53380.1 68418.m06633 hypothetical protein
Length = 483
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 237 LEGRLRVRAATAQRLRQESPVQRSETRTAR 326
L G++R+RA A LRQ+ +Q E A+
Sbjct: 300 LPGKIRIRAGVAVNLRQDIGIQPLEDMLAK 329
>At2g36410.2 68415.m04470 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 192
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +2
Query: 347 SRQNIERTAEEL---RKAHPDVEKNATALREKLQAAVQNTVQESXKLA 481
SR++ E T L R ++EK +RE++QA + QE+ +L+
Sbjct: 54 SREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRLS 101
>At2g36410.1 68415.m04469 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 195
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +2
Query: 347 SRQNIERTAEEL---RKAHPDVEKNATALREKLQAAVQNTVQESXKLA 481
SR++ E T L R ++EK +RE++QA + QE+ +L+
Sbjct: 54 SREDEEMTRSALSAFRAKEDEIEKRRMEVRERIQAQLGRVEQETKRLS 101
>At1g72100.1 68414.m08334 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to embryogenic gene [Betula
pendula] GI:4539485; contains Pfam profile PF02987: Late
embryogenesis abundant protein
Length = 480
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 323 KAXEALEQSRQNIERTAEEL-RKAHPDVEKNATALREKLQAAVQNTVQESXKLAKKVSS 496
KA +A E+ R+ E + +KAH E+ +REK Q + +S ++V +
Sbjct: 233 KAHDAKEKVREKAHDVKETVAQKAHESKERAKDRVREKAQELKETATHKSKNAWERVKN 291
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,104,311
Number of Sequences: 28952
Number of extensions: 141522
Number of successful extensions: 691
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -